Detailed information    

insolico Bioinformatically predicted

Overview


Name   micB   Type   Regulator
Locus tag   ELZ47_RS03980 Genome accession   NZ_LR134002
Coordinates   770745..772094 (+) Length   449 a.a.
NCBI ID   WP_125331413.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 765745..777094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS03955 (NCTC10904_00777) - 766384..767076 (+) 693 WP_185758705.1 AAA family ATPase -
  ELZ47_RS03960 (NCTC10904_00778) thrS 767073..769016 (+) 1944 WP_126435316.1 threonine--tRNA ligase -
  ELZ47_RS03965 (NCTC10904_00779) - 769108..769512 (-) 405 WP_125331412.1 hypothetical protein -
  ELZ47_RS03970 - 769622..769804 (-) 183 Protein_727 amino acid ABC transporter permease -
  ELZ47_RS03975 (NCTC10904_00780) micA 770051..770752 (+) 702 WP_002894937.1 response regulator YycF Regulator
  ELZ47_RS03980 (NCTC10904_00781) micB 770745..772094 (+) 1350 WP_125331413.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ELZ47_RS03985 (NCTC10904_00782) vicX 772104..772904 (+) 801 WP_125331414.1 MBL fold metallo-hydrolase Regulator
  ELZ47_RS03990 (NCTC10904_00783) - 772996..773355 (+) 360 WP_004186130.1 YbaN family protein -
  ELZ47_RS03995 (NCTC10904_00784) rnc 773477..774175 (+) 699 WP_002903151.1 ribonuclease III -

Sequence


Protein


Download         Length: 449 a.a.        Molecular weight: 50961.83 Da        Isoelectric Point: 4.3896

>NTDB_id=1117814 ELZ47_RS03980 WP_125331413.1 770745..772094(+) (micB) [Streptococcus sanguinis strain NCTC 10904]
MIEAIKQFVVSADFVFAIIIIGFIVVVALLLLENRRDNQKLVQLNQKVKDLIAGDYSEVLDMQGSPEITDMTNSINDLSE
VIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEVQNMSILDLLSISDEYDLRDLITNVPE
LTIDSQDENGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQDKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIW
VEIDTDKLTQVIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLPYENDGVRDDDWDNEDDI

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1117814 ELZ47_RS03980 WP_125331413.1 770745..772094(+) (micB) [Streptococcus sanguinis strain NCTC 10904]
ATGATTGAAGCAATTAAACAATTTGTGGTTTCTGCGGATTTTGTCTTTGCAATCATTATTATCGGCTTCATTGTAGTTGT
TGCCTTGCTTTTATTGGAAAATCGCCGTGATAACCAAAAGCTTGTACAGCTTAATCAAAAGGTTAAAGATTTGATTGCAG
GTGACTATTCTGAAGTGCTGGACATGCAAGGGAGTCCAGAAATCACAGATATGACCAACAGTATCAATGATCTTTCAGAG
GTCATTCGTCTGACACATGAAAACCTTGAGCAAGAAACTAAACGCCTTTCCAGTATCCTGTCCTATATGACAGATGGAGT
GCTTGCGACCAACCGCCGGGGGCAGATTATCACTATCAACGATATGGCAACCAAGCAGTTGGGAGTTAAGAGAGATGAGG
TCCAAAATATGAGTATTTTGGATCTGCTTTCGATTTCAGACGAGTATGATTTGCGGGACTTGATTACCAATGTTCCTGAG
CTGACGATAGATTCTCAGGATGAAAATGGTGAGTACTTGAGCTTGCGGGTTCGCTTTGCCTTGGTAAGGCGGGAGTCGGG
CTTCATTTCTGGTTTGGTAGCTGTCTTGCATGATACGACAGAGCAGGACAAGGAAGAACGGGAGCGTCGCCTCTTTGTCT
CCAACGTCAGCCATGAGTTGCGGACTCCGCTGACCAGTGTTAAGTCCTATCTGGAAGCCTTGGATGAGGGAGCCTTGTCT
GAGCCAGTAGCACCGGACTTTGTCAAGGTATCGCTCAATGAAACCAACCGCATGATGCGGATGGTGACGGACTTGCTCAG
TCTGTCCCGTATTGACAACGAGACCAGTCATCTGGAAGTGGAGCTGACGAATTTCACAGCCTTCATAACTTTTATCCTCA
ATCGCTTTGACAAGATAAAGAATCAAGACGAGACCAAGAAATACGAGATTATCCGTGATTATCCCATTACACCGATTTGG
GTGGAGATTGATACAGATAAGCTGACTCAGGTGATTGATAATATCATGAACAATGCCATCAAGTATTCGCCGGATGGTGG
AACCATTACTGTTTCCATCAAGACAACTGATGAGCAGTTGATTCTTTCGATTGCGGATGAAGGTCTGGGAATTCCCAAGC
AGGACTTGCCTAAGATTTTTGACCGCTTTTATCGAGTGGACAAGGCACGCAGCCGTGCCCAAGGCGGAACGGGTCTGGGG
CTGGCTATTGCCAAGGAAATTATCAAGCAGCATCAGGGATTTATCTGGGCTAAGAGTGAGTATGGTGTGGGCTCGACCTT
TACCATTGTCTTGCCTTATGAGAATGATGGCGTCCGCGATGACGACTGGGATAATGAAGATGATATATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

78.588

97.773

0.768

  vicK Streptococcus mutans UA159

70.72

89.755

0.635


Multiple sequence alignment