Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL014_RS20805 Genome accession   NZ_LR134000
Coordinates   4256843..4257379 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain NCTC9066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4251843..4262379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL014_RS20785 soxR 4253571..4254035 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EL014_RS20790 (NCTC9066_04127) soxS 4254121..4254444 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EL014_RS20795 (NCTC9066_04128) pdeC 4254447..4256033 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  EL014_RS20800 (NCTC9066_04129) yjcB 4256463..4256744 (+) 282 WP_001295689.1 YjcB family protein -
  EL014_RS20805 (NCTC9066_04130) ssb 4256843..4257379 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EL014_RS20810 (NCTC9066_04131) uvrA 4257634..4260456 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  EL014_RS20815 (NCTC9066_04132) yjbR 4260491..4260847 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EL014_RS20820 (NCTC9066_04133) yjbQ 4260851..4261267 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EL014_RS20825 (NCTC9066_04134) aphA 4261378..4262091 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1117784 EL014_RS20805 WP_000168305.1 4256843..4257379(-) (ssb) [Escherichia coli strain NCTC9066]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1117784 EL014_RS20805 WP_000168305.1 4256843..4257379(-) (ssb) [Escherichia coli strain NCTC9066]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment