Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ELZ45_RS01735 Genome accession   NZ_LR133917
Coordinates   363638..364141 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain NCTC8317     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 363638..381061 363638..364141 within 0


Gene organization within MGE regions


Location: 363638..381061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ45_RS01735 (NCTC8317_00319) ssbA 363638..364141 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ELZ45_RS01740 (NCTC8317_00320) rpsR 364193..364435 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  ELZ45_RS01745 (NCTC8317_00321) - 364617..365447 (-) 831 WP_000357932.1 KilA-N domain-containing protein -
  ELZ45_RS01750 (NCTC8317_00323) - 365930..367147 (-) 1218 WP_000270125.1 tyrosine-type recombinase/integrase -
  ELZ45_RS01755 (NCTC8317_00324) - 367173..368096 (-) 924 WP_050436923.1 helix-turn-helix transcriptional regulator -
  ELZ45_RS01760 (NCTC8317_00325) - 368203..368403 (+) 201 WP_001033058.1 helix-turn-helix domain-containing protein -
  ELZ45_RS01765 (NCTC8317_00326) - 368442..368654 (+) 213 WP_000551774.1 helix-turn-helix transcriptional regulator -
  ELZ45_RS01770 (NCTC8317_00327) - 368655..368927 (+) 273 WP_001138301.1 helix-turn-helix domain-containing protein -
  ELZ45_RS01775 (NCTC8317_00328) - 368939..369112 (+) 174 WP_072470692.1 pathogenicity island protein -
  ELZ45_RS01780 (NCTC8317_00329) - 369079..369282 (+) 204 WP_001231389.1 hypothetical protein -
  ELZ45_RS01785 (NCTC8317_00330) - 369284..369667 (+) 384 WP_000695070.1 hypothetical protein -
  ELZ45_RS01790 (NCTC8317_00331) - 369668..369988 (+) 321 WP_001103951.1 DUF1474 family protein -
  ELZ45_RS01795 (NCTC8317_00332) - 370054..370923 (+) 870 WP_001002727.1 primase alpha helix C-terminal domain-containing protein -
  ELZ45_RS01800 (NCTC8317_00333) - 370940..372409 (+) 1470 WP_031928070.1 virulence-associated E family protein -
  ELZ45_RS01805 (NCTC8317_00334) - 372688..373050 (+) 363 WP_001039165.1 hypothetical protein -
  ELZ45_RS01810 (NCTC8317_00335) - 373043..373315 (+) 273 WP_000477476.1 hypothetical protein -
  ELZ45_RS01815 (NCTC8317_00336) - 373317..373958 (+) 642 WP_001019288.1 hypothetical protein -
  ELZ45_RS01820 (NCTC8317_00337) - 374494..374835 (+) 342 WP_001190614.1 hypothetical protein -
  ELZ45_RS01825 (NCTC8317_00338) - 374866..375519 (+) 654 WP_000214169.1 hypothetical protein -
  ELZ45_RS01830 (NCTC8317_00339) - 375572..376099 (+) 528 WP_000771369.1 spore coat protein -
  ELZ45_RS01835 (NCTC8317_00340) - 376102..376443 (+) 342 WP_000358778.1 hypothetical protein -
  ELZ45_RS01840 (NCTC8317_00341) - 376440..377009 (+) 570 WP_001293089.1 terminase small subunit -
  ELZ45_RS01845 (NCTC8317_00342) seb 377317..378117 (+) 801 WP_000278086.1 staphylococcal enterotoxin type B -
  ELZ45_RS01850 (NCTC8317_00343) - 378195..378752 (-) 558 WP_001035617.1 DUF4888 domain-containing protein -
  ELZ45_RS01855 (NCTC8317_00344) - 379335..379541 (+) 207 WP_161484570.1 hypothetical protein -
  ELZ45_RS01860 (NCTC8317_00345) - 380087..381025 (-) 939 WP_001822249.1 Abi family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1117621 ELZ45_RS01735 WP_000934799.1 363638..364141(+) (ssbA) [Staphylococcus aureus strain NCTC8317]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1117621 ELZ45_RS01735 WP_000934799.1 363638..364141(+) (ssbA) [Staphylococcus aureus strain NCTC8317]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment