Detailed information NTG0111734

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: PMCN03_RS06575
• Genome accession: NZ_CP003328
• Coordinates: 1456635..1457135 (+)
• Length: 166 a.a.
• NCBI ID: WP_005719438.1
• Uniprot ID: A0A9X3URY5
• Organism: Pasteurella multocida subsp. multocida str. HB03
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1457318..1457782	1456635..1457135	flank	183

Gene organization within MGE regions

Location: 1456635..1457782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMCN03_RS06575 (PMCN03_1332)	ssb	1456635..1457135 (+)	501	WP_005719438.1	single-stranded DNA-binding protein	Machinery gene
PMCN03_RS06580 (PMCN03_1333)	tnpA	1457318..1457782 (+)	465	WP_014325726.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 166 a.a.
• Molecular weight: 18673.68 Da
• Isoelectric Point: 5.3353

>NTDB_id=111734 PMCN03_RS06575 WP_005719438.1 1456635..1457135(+) (ssb) [Pasteurella multocida subsp. multocida str. HB03]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide

• Length: 501 bp

>NTDB_id=111734 PMCN03_RS06575 WP_005719438.1 1456635..1457135(+) (ssb) [Pasteurella multocida subsp. multocida str. HB03]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	69.231	100	0.759
ssb	Vibrio cholerae strain A1552	53.591	100	0.584
ssb	Neisseria meningitidis MC58	44.068	100	0.47
ssb	Neisseria gonorrhoeae MS11	44.068	100	0.47