Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GBCGDNIH2_RS06570 Genome accession   NZ_CP003183
Coordinates   1399330..1399851 (-) Length   173 a.a.
NCBI ID   WP_011631927.1    Uniprot ID   Q0BST4
Organism   Granulibacter bethesdensis strain NIH2.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1394330..1404851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBCGDNIH2_RS06555 (GbCGDNIH2_1217) - 1395204..1395707 (-) 504 WP_025286635.1 peptidylprolyl isomerase -
  GBCGDNIH2_RS06560 (GbCGDNIH2_1218) coaD 1395800..1396351 (-) 552 WP_011631925.1 pantetheine-phosphate adenylyltransferase -
  GBCGDNIH2_RS06565 (GbCGDNIH2_1219) gyrA 1396344..1399100 (-) 2757 WP_050748541.1 DNA gyrase subunit A -
  GBCGDNIH2_RS06570 (GbCGDNIH2_1220) ssb 1399330..1399851 (-) 522 WP_011631927.1 single-stranded DNA-binding protein Machinery gene
  GBCGDNIH2_RS06575 (GbCGDNIH2_1221) uvrA 1400019..1402889 (+) 2871 WP_025318974.1 excinuclease ABC subunit UvrA -
  GBCGDNIH2_RS06580 (GbCGDNIH2_1223) - 1403209..1403415 (+) 207 WP_011631930.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18563.35 Da        Isoelectric Point: 6.4931

>NTDB_id=111718 GBCGDNIH2_RS06570 WP_011631927.1 1399330..1399851(-) (ssb) [Granulibacter bethesdensis strain NIH2.1]
MAGSVNKVILIGNLGRDPEVRNTQDGGKVVNFTLATSETWNDRASGERKERTEWHRVVVFNDRLADIAERYLRKGTKVYV
EGALQTRKWTDQAGQEKYTTEVVISRFRGEITMLDSRSGGEGAGEGGGYRSAPAQRAPSGGGSGFGGGSSRPASGGSGWE
PSHGGDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=111718 GBCGDNIH2_RS06570 WP_011631927.1 1399330..1399851(-) (ssb) [Granulibacter bethesdensis strain NIH2.1]
ATGGCTGGCAGTGTCAATAAGGTCATTCTGATCGGTAATCTCGGGCGCGACCCCGAAGTTCGCAATACCCAGGATGGCGG
CAAGGTGGTGAATTTTACGCTCGCGACCAGCGAAACGTGGAATGATCGTGCTTCCGGTGAGCGGAAAGAACGCACCGAAT
GGCATCGTGTGGTGGTCTTTAATGACCGGTTGGCGGATATCGCCGAACGCTATCTGCGCAAGGGCACCAAGGTCTATGTC
GAAGGGGCGCTTCAGACCAGAAAATGGACCGACCAGGCCGGACAGGAAAAATACACCACTGAGGTCGTGATCAGCCGCTT
CCGTGGTGAAATCACCATGCTGGACAGCCGTTCGGGCGGGGAAGGGGCTGGTGAAGGCGGTGGCTATCGGTCCGCTCCCG
CCCAGCGTGCGCCATCCGGCGGTGGCAGCGGATTTGGTGGTGGCAGCAGCCGCCCTGCATCCGGTGGCAGTGGATGGGAA
CCTTCTCATGGTGGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0BST4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.514
  ssb Vibrio cholerae strain A1552

48.864

100

0.497
  ssb Neisseria meningitidis MC58

42.935

100

0.457
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.457

Multiple sequence alignment