Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EJK95_RS01430 Genome accession   NZ_LR130532
Coordinates   310678..311214 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate ecoli019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 305678..316214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJK95_RS01410 (BANRA_00311) aphA 305967..306680 (+) 714 WP_001315956.1 acid phosphatase AphA -
  EJK95_RS01415 (BANRA_00312) yjbQ 306791..307207 (+) 417 WP_106474786.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EJK95_RS01420 (BANRA_00313) yjbR 307211..307567 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EJK95_RS01425 (BANRA_00314) uvrA 307602..310424 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  EJK95_RS01430 (BANRA_00315) ssb 310678..311214 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EJK95_RS01435 (BANRA_00316) yjcB 311313..311594 (-) 282 WP_001295689.1 YjcB family protein -
  EJK95_RS01440 (BANRA_00317) pdeC 312024..313610 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  EJK95_RS01445 (BANRA_00318) soxS 313613..313936 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EJK95_RS01450 (BANRA_00319) soxR 314022..314486 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1117102 EJK95_RS01430 WP_000168305.1 310678..311214(+) (ssb) [Escherichia coli isolate ecoli019]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1117102 EJK95_RS01430 WP_000168305.1 310678..311214(+) (ssb) [Escherichia coli isolate ecoli019]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment