Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GBCGDNIH3_RS06190 | Genome accession | NZ_CP003181 |
| Coordinates | 1351442..1351963 (-) | Length | 173 a.a. |
| NCBI ID | WP_011631927.1 | Uniprot ID | Q0BST4 |
| Organism | Granulibacter bethesdensis strain NIH3.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1346442..1356963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBCGDNIH3_RS06165 (GbCGDNIH3_1216) | - | 1346776..1347054 (+) | 279 | WP_025286634.1 | hypothetical protein | - |
| GBCGDNIH3_RS06175 (GbCGDNIH3_1217) | - | 1347316..1347819 (-) | 504 | WP_025286635.1 | peptidylprolyl isomerase | - |
| GBCGDNIH3_RS06180 (GbCGDNIH3_1218) | coaD | 1347912..1348463 (-) | 552 | WP_025286636.1 | pantetheine-phosphate adenylyltransferase | - |
| GBCGDNIH3_RS06185 (GbCGDNIH3_1219) | gyrA | 1348456..1351212 (-) | 2757 | WP_051496987.1 | DNA gyrase subunit A | - |
| GBCGDNIH3_RS06190 (GbCGDNIH3_1220) | ssb | 1351442..1351963 (-) | 522 | WP_011631927.1 | single-stranded DNA-binding protein | Machinery gene |
| GBCGDNIH3_RS06195 (GbCGDNIH3_1221) | uvrA | 1352131..1355001 (+) | 2871 | WP_025286638.1 | excinuclease ABC subunit UvrA | - |
| GBCGDNIH3_RS06200 (GbCGDNIH3_1223) | - | 1355321..1355527 (+) | 207 | WP_025286639.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18563.35 Da Isoelectric Point: 6.4931
>NTDB_id=111704 GBCGDNIH3_RS06190 WP_011631927.1 1351442..1351963(-) (ssb) [Granulibacter bethesdensis strain NIH3.1]
MAGSVNKVILIGNLGRDPEVRNTQDGGKVVNFTLATSETWNDRASGERKERTEWHRVVVFNDRLADIAERYLRKGTKVYV
EGALQTRKWTDQAGQEKYTTEVVISRFRGEITMLDSRSGGEGAGEGGGYRSAPAQRAPSGGGSGFGGGSSRPASGGSGWE
PSHGGDLDDEIPF
MAGSVNKVILIGNLGRDPEVRNTQDGGKVVNFTLATSETWNDRASGERKERTEWHRVVVFNDRLADIAERYLRKGTKVYV
EGALQTRKWTDQAGQEKYTTEVVISRFRGEITMLDSRSGGEGAGEGGGYRSAPAQRAPSGGGSGFGGGSSRPASGGSGWE
PSHGGDLDDEIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=111704 GBCGDNIH3_RS06190 WP_011631927.1 1351442..1351963(-) (ssb) [Granulibacter bethesdensis strain NIH3.1]
ATGGCTGGCAGTGTCAATAAGGTCATTCTGATCGGTAATCTCGGGCGCGACCCCGAAGTTCGCAATACCCAGGATGGCGG
CAAGGTGGTGAATTTTACGCTCGCGACCAGCGAAACGTGGAATGATCGTGCTTCCGGTGAGCGGAAAGAACGCACCGAAT
GGCATCGTGTGGTGGTCTTTAATGACCGGTTGGCGGATATCGCCGAACGCTATCTGCGCAAGGGCACCAAGGTCTATGTC
GAAGGGGCGCTTCAGACCAGAAAATGGACCGACCAGGCCGGACAGGAAAAATACACCACTGAGGTCGTGATCAGCCGCTT
CCGTGGTGAAATCACCATGCTGGACAGCCGTTCGGGCGGGGAAGGGGCTGGTGAAGGCGGTGGCTATCGGTCCGCTCCCG
CCCAGCGTGCGCCATCCGGCGGCGGCAGCGGATTTGGTGGTGGCAGCAGCCGCCCTGCATCCGGTGGCAGTGGATGGGAA
CCTTCTCATGGCGGTGATCTGGACGACGAAATTCCGTTCTGA
ATGGCTGGCAGTGTCAATAAGGTCATTCTGATCGGTAATCTCGGGCGCGACCCCGAAGTTCGCAATACCCAGGATGGCGG
CAAGGTGGTGAATTTTACGCTCGCGACCAGCGAAACGTGGAATGATCGTGCTTCCGGTGAGCGGAAAGAACGCACCGAAT
GGCATCGTGTGGTGGTCTTTAATGACCGGTTGGCGGATATCGCCGAACGCTATCTGCGCAAGGGCACCAAGGTCTATGTC
GAAGGGGCGCTTCAGACCAGAAAATGGACCGACCAGGCCGGACAGGAAAAATACACCACTGAGGTCGTGATCAGCCGCTT
CCGTGGTGAAATCACCATGCTGGACAGCCGTTCGGGCGGGGAAGGGGCTGGTGAAGGCGGTGGCTATCGGTCCGCTCCCG
CCCAGCGTGCGCCATCCGGCGGCGGCAGCGGATTTGGTGGTGGCAGCAGCCGCCCTGCATCCGGTGGCAGTGGATGGGAA
CCTTCTCATGGCGGTGATCTGGACGACGAAATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
47.594 |
100 |
0.514 |
| ssb | Vibrio cholerae strain A1552 |
48.864 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
42.935 |
100 |
0.457 |
| ssb | Neisseria gonorrhoeae MS11 |
42.935 |
100 |
0.457 |