Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ASU1_RS07575 Genome accession   NZ_CP009159
Coordinates   1660640..1661317 (+) Length   225 a.a.
NCBI ID   WP_014992167.1    Uniprot ID   A0ABT1WV43
Organism   Actinobacillus suis ATCC 33415     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655640..1666317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU1_RS07540 (ASU1_07420) rpmG 1656507..1656677 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  ASU1_RS07545 (ASU1_07425) rpmB 1656689..1656925 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  ASU1_RS07550 (ASU1_07430) radC 1657081..1657755 (-) 675 WP_039195346.1 DNA repair protein RadC Machinery gene
  ASU1_RS07555 (ASU1_07435) coaBC 1657959..1659164 (+) 1206 WP_014992164.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ASU1_RS07560 (ASU1_07440) dut 1659173..1659628 (+) 456 WP_039195348.1 dUTP diphosphatase -
  ASU1_RS07565 (ASU1_07445) slmA 1659731..1660339 (+) 609 WP_039195349.1 nucleoid occlusion factor SlmA -
  ASU1_RS07570 (ASU1_07450) - 1660345..1660563 (+) 219 WP_005599748.1 YheU family protein -
  ASU1_RS07575 (ASU1_07455) crp 1660640..1661317 (+) 678 WP_014992167.1 cAMP-activated global transcriptional regulator CRP Regulator
  ASU1_RS07580 (ASU1_07460) - 1661366..1661689 (-) 324 WP_014992168.1 MazG-like family protein -
  ASU1_RS07585 (ASU1_07465) hflX 1661739..1663097 (-) 1359 WP_081541480.1 ribosome rescue GTPase HflX -
  ASU1_RS07590 (ASU1_07470) hfq 1663135..1663413 (-) 279 WP_014992170.1 RNA chaperone Hfq -
  ASU1_RS07595 (ASU1_07475) miaA 1663480..1664424 (-) 945 WP_014992171.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ASU1_RS07600 (ASU1_07480) adhP 1664552..1665598 (-) 1047 WP_231951971.1 alcohol dehydrogenase AdhP -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25186.06 Da        Isoelectric Point: 6.5834

>NTDB_id=111685 ASU1_RS07575 WP_014992167.1 1660640..1661317(+) (crp) [Actinobacillus suis ATCC 33415]
MQDISISTPQIDGEISAPPSIHDPAVEWFLTHCHIHRYPSKYTLIHAGEDAESLFYIVSGSVAVFIKDDEGKEMILSHLG
QGEFVGEISLFEESVQPRTAWVKTKGACEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVSNLAFLDVTGRIA
QTLMNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=111685 ASU1_RS07575 WP_014992167.1 1660640..1661317(+) (crp) [Actinobacillus suis ATCC 33415]
ATGCAAGATATTTCAATTTCTACGCCTCAGATTGACGGAGAAATCTCAGCACCACCATCAATCCATGACCCTGCTGTGGA
GTGGTTTCTGACTCACTGTCATATTCATCGTTACCCGTCAAAATACACGCTAATTCACGCCGGTGAAGATGCTGAATCTT
TATTCTATATTGTGAGCGGTTCGGTTGCGGTATTTATTAAAGACGATGAAGGTAAAGAAATGATTCTTTCTCACCTTGGA
CAAGGCGAGTTTGTTGGTGAAATCAGTTTATTTGAAGAATCTGTTCAACCACGTACCGCTTGGGTCAAAACGAAAGGTGC
TTGCGAAATTGCAGAAATCTCGTATAAAAAATTCAAACAGCTTGTGCATTTAAATCCGGATATTTTAATGTATCTTTCTG
CGCAAATGGCTCGCCGCTTACGCCAAACTTCACGCCAAGTAAGTAATCTTGCTTTCTTAGACGTAACCGGTCGTATTGCA
CAAACTTTAATGAATCTGGCGAAAATGCCGGATGCGATGACCCACCCTGAAGGAATGCAAATTAAAATCACCCGCCAAGA
AATTGGTCAAATGGTCGGTTGTTCACGTGAAACGGTCGGCAGAATCTTAAAAATGTTAGAAGATGAAGGCTTAATTTCTG
CGCACGGTAAAACCATTGTGGTTTACGGTACTCGCTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(37-122)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(157-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

77.34

90.222

0.698
  crp Haemophilus influenzae Rd KW20

74.384

90.222

0.671
  crp Acinetobacter baumannii D1279779

48

88.889

0.427

Multiple sequence alignment