Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ASU1_RS07550 Genome accession   NZ_CP009159
Coordinates   1657081..1657755 (-) Length   224 a.a.
NCBI ID   WP_039195346.1    Uniprot ID   A0ABT1WS57
Organism   Actinobacillus suis ATCC 33415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1652081..1662755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU1_RS07525 (ASU1_07405) - 1652576..1652908 (-) 333 WP_014992160.1 DUF413 domain-containing protein -
  ASU1_RS07530 (ASU1_07410) ddc 1653106..1654641 (-) 1536 WP_014992161.1 L-2,4-diaminobutyrate decarboxylase -
  ASU1_RS07535 (ASU1_07415) - 1654770..1656134 (-) 1365 WP_014992162.1 diaminobutyrate--2-oxoglutarate transaminase -
  ASU1_RS07540 (ASU1_07420) rpmG 1656507..1656677 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  ASU1_RS07545 (ASU1_07425) rpmB 1656689..1656925 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  ASU1_RS07550 (ASU1_07430) radC 1657081..1657755 (-) 675 WP_039195346.1 DNA repair protein RadC Machinery gene
  ASU1_RS07555 (ASU1_07435) coaBC 1657959..1659164 (+) 1206 WP_014992164.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ASU1_RS07560 (ASU1_07440) dut 1659173..1659628 (+) 456 WP_039195348.1 dUTP diphosphatase -
  ASU1_RS07565 (ASU1_07445) slmA 1659731..1660339 (+) 609 WP_039195349.1 nucleoid occlusion factor SlmA -
  ASU1_RS07570 (ASU1_07450) - 1660345..1660563 (+) 219 WP_005599748.1 YheU family protein -
  ASU1_RS07575 (ASU1_07455) crp 1660640..1661317 (+) 678 WP_014992167.1 cAMP-activated global transcriptional regulator CRP Regulator
  ASU1_RS07580 (ASU1_07460) - 1661366..1661689 (-) 324 WP_014992168.1 MazG-like family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25652.89 Da        Isoelectric Point: 6.6971

>NTDB_id=111684 ASU1_RS07550 WP_039195346.1 1657081..1657755(-) (radC) [Actinobacillus suis ATCC 33415]
MCNAELMPREKLLAYGAESLTDQELLAIFLRTGIKGLPVMQLSETVLKQFGSLRGLLSADVKAFCQMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENITEPYLAVMCFQTELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGLCTPSESDRMLTKKIEMACDLVEIRFVDHIVVGKGDYFSFEEEKFRRNNS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=111684 ASU1_RS07550 WP_039195346.1 1657081..1657755(-) (radC) [Actinobacillus suis ATCC 33415]
ATGTGTAATGCAGAATTAATGCCACGAGAAAAATTATTAGCTTATGGAGCGGAGTCCTTAACTGATCAAGAATTATTGGC
GATTTTTTTGCGTACCGGCATTAAGGGGTTGCCGGTGATGCAATTATCTGAAACGGTACTCAAACAATTTGGTTCGTTAA
GAGGGTTACTTAGTGCGGATGTAAAAGCATTTTGTCAGATGAAAGGATTAGGGCAAACGCAATTTATTCAATTACAAGCT
TCAAAAGAAATGACTAAGCGTTATTTAGCGCAACAAATGCAGGTGCGAGAAAACATTACGGAACCTTATTTAGCCGTGAT
GTGTTTTCAGACGGAACTGGAATCGGAAGAACGAGAGGTGTTTATGGTGATGTTTCTCGATAATCAGAATCGCTTAATTA
AAAAAGAAAAAATGTTTTACGGCACGATTAATCAAGCAACGGTTTACCCTAGAGAAATAATCAAAGAAGCATTAAAATGC
AATGCGGCGGCAATTATTGTCGCTCATAATCATCCGTCAGGTCTTTGTACGCCTTCGGAATCGGATAGGATGCTCACTAA
GAAGATTGAAATGGCGTGTGATTTGGTTGAAATTCGCTTTGTTGATCATATTGTCGTCGGAAAAGGTGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCCGAAATAATTCATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

66.355

95.536

0.634

Multiple sequence alignment