Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BUMPF009_RS02780 | Genome accession | NZ_CP002703 |
| Coordinates | 583728..584261 (-) | Length | 177 a.a. |
| NCBI ID | WP_025369164.1 | Uniprot ID | W0P469 |
| Organism | Buchnera aphidicola str. F009 (Myzus persicae) strain F009 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 578728..589261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUMPF009_RS02765 (BUMPF009_CDS00061) | - | 580004..581599 (-) | 1596 | WP_025369161.1 | peptide chain release factor 3 | - |
| BUMPF009_RS02770 (BUMPF009_CDS00060) | ansA | 581885..582898 (+) | 1014 | WP_025369162.1 | asparaginase | - |
| BUMPF009_RS02775 (BUMPF009_CDS00059) | - | 582914..583504 (-) | 591 | WP_025369163.1 | NfuA family Fe-S biogenesis protein | - |
| BUMPF009_RS02780 (BUMPF009_CDS00058) | ssb | 583728..584261 (-) | 534 | WP_025369164.1 | single-stranded DNA-binding protein | Machinery gene |
| BUMPF009_RS02785 (BUMPF009_CDS00057) | dnaB | 584769..586166 (+) | 1398 | WP_025369165.1 | replicative DNA helicase | - |
| BUMPF009_RS02790 (BUMPF009_CDS00056) | gshB | 586508..587467 (+) | 960 | WP_025369166.1 | glutathione synthase | - |
| BUMPF009_RS02795 (BUMPF009_CDS00055) | ruvX | 587478..587897 (+) | 420 | WP_025369167.1 | Holliday junction resolvase RuvX | - |
| BUMPF009_RS02800 (BUMPF009_CDS00054) | - | 588012..588599 (+) | 588 | WP_235065621.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 20013.26 Da Isoelectric Point: 6.4953
>NTDB_id=111684 BUMPF009_RS02780 WP_025369164.1 583728..584261(-) (ssb) [Buchnera aphidicola str. F009 (Myzus persicae) strain F009]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIVVNIGGTMQMLGSRNSNTNTNTNTNKTLTHDNNIHSVKIKKTDKSDFTKNTEPYTSNK
ESVDSISELDFDDDIPF
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIVVNIGGTMQMLGSRNSNTNTNTNTNKTLTHDNNIHSVKIKKTDKSDFTKNTEPYTSNK
ESVDSISELDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=111684 BUMPF009_RS02780 WP_025369164.1 583728..584261(-) (ssb) [Buchnera aphidicola str. F009 (Myzus persicae) strain F009]
ATGGCTAGTAGAGGTGTAAATAAAGTTATTCTGATTGGGCATTTAGGTCAAGATCCTGAAGTTCGTTATATGCCTAATGG
TAATGCGGTAGTGAATATGACATTAGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTG
AATGGCATAGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATT
GAAGGATCATTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAGAACGCTACACTACAGAAATTGTTGTAAATATTGG
AGGTACAATGCAAATGCTAGGTAGTCGGAACTCTAATACTAATACTAATACTAATACTAATAAAACATTAACACATGACA
ATAATATACATTCAGTAAAAATCAAAAAAACAGATAAATCAGATTTTACTAAAAACACAGAACCATATACATCAAACAAA
GAATCGGTTGATTCTATTTCAGAATTAGATTTTGATGATGATATTCCTTTTTAA
ATGGCTAGTAGAGGTGTAAATAAAGTTATTCTGATTGGGCATTTAGGTCAAGATCCTGAAGTTCGTTATATGCCTAATGG
TAATGCGGTAGTGAATATGACATTAGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTG
AATGGCATAGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATT
GAAGGATCATTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAGAACGCTACACTACAGAAATTGTTGTAAATATTGG
AGGTACAATGCAAATGCTAGGTAGTCGGAACTCTAATACTAATACTAATACTAATACTAATAAAACATTAACACATGACA
ATAATATACATTCAGTAAAAATCAAAAAAACAGATAAATCAGATTTTACTAAAAACACAGAACCATATACATCAAACAAA
GAATCGGTTGATTCTATTTCAGAATTAGATTTTGATGATGATATTCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.18 |
100 |
0.565 |
| ssb | Glaesserella parasuis strain SC1401 |
49.171 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
44.886 |
99.435 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
99.435 |
0.441 |