Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EW032_RS01755 Genome accession   NZ_LR130509
Coordinates   367218..367721 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain BPH2760 isolate BPH2760     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 367218..388455 367218..367721 within 0


Gene organization within MGE regions


Location: 367218..388455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW032_RS01755 ssbA 367218..367721 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  EW032_RS01760 rpsR 367773..368015 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  EW032_RS01765 - 368131..369237 (-) 1107 WP_000715303.1 Abi family protein -
  EW032_RS01770 - 369418..370629 (-) 1212 WP_033854764.1 tyrosine-type recombinase/integrase -
  EW032_RS01775 - 370790..371413 (-) 624 WP_033854765.1 helix-turn-helix domain-containing protein -
  EW032_RS01780 - 371562..371726 (+) 165 WP_033854775.1 helix-turn-helix domain-containing protein -
  EW032_RS01785 - 371727..371999 (+) 273 WP_033854766.1 hypothetical protein -
  EW032_RS01790 - 372011..372157 (+) 147 WP_000784888.1 hypothetical protein -
  EW032_RS01795 tscA 372150..372359 (+) 210 WP_001058492.1 type II toxin-antitoxin system antitoxin TscA -
  EW032_RS01800 tscT 372362..372661 (+) 300 WP_050961496.1 type II toxin-antitoxin system toxin TscT -
  EW032_RS01805 - 372736..374349 (+) 1614 WP_129621085.1 phage resistance protein -
  EW032_RS01810 - 374520..375323 (+) 804 WP_000148371.1 bifunctional DNA primase/polymerase -
  EW032_RS01815 - 375310..375582 (+) 273 WP_001149387.1 hypothetical protein -
  EW032_RS01820 - 375584..376225 (+) 642 WP_001019773.1 hypothetical protein -
  EW032_RS01825 - 376675..377016 (+) 342 WP_001190606.1 hypothetical protein -
  EW032_RS01830 - 377028..377606 (+) 579 WP_000846280.1 hypothetical protein -
  EW032_RS01835 - 377624..377842 (+) 219 WP_000448770.1 capsid morphogenesis B protein -
  EW032_RS01840 - 377893..378420 (+) 528 WP_000771366.1 spore coat protein -
  EW032_RS01845 - 378552..378764 (+) 213 WP_045181470.1 hypothetical protein -
  EW032_RS01850 - 378761..379330 (+) 570 WP_001293074.1 terminase small subunit -
  EW032_RS01855 - 379545..380117 (+) 573 WP_000337708.1 hypothetical protein -
  EW032_RS01860 - 380138..380434 (+) 297 WP_000523349.1 hypothetical protein -
  EW032_RS01865 - 380434..380874 (+) 441 WP_000146510.1 protein-export chaperone SecB -
  EW032_RS01870 - 381180..381938 (+) 759 WP_001059540.1 hypothetical protein -
  EW032_RS14210 - 382390..382506 (+) 117 Protein_354 hypothetical protein -
  EW032_RS01875 - 382749..382901 (+) 153 WP_001795626.1 hypothetical protein -
  EW032_RS01880 - 382972..383082 (+) 111 WP_000139423.1 hypothetical protein -
  EW032_RS01885 - 383084..383269 (+) 186 WP_001286805.1 hypothetical protein -
  EW032_RS01890 - 384056..384994 (-) 939 WP_072419886.1 Abi family protein -
  EW032_RS01895 - 385045..385747 (-) 703 Protein_359 tyrosine-type recombinase/integrase -
  EW032_RS01900 - 385953..386564 (+) 612 WP_000473942.1 exotoxin beta-grasp domain-containing protein -
  EW032_RS01905 - 386933..387305 (+) 373 Protein_361 YxeA family protein -
  EW032_RS01910 - 387482..388054 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  EW032_RS01915 - 388192..388455 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1116760 EW032_RS01755 WP_000934799.1 367218..367721(+) (ssbA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1116760 EW032_RS01755 WP_000934799.1 367218..367721(+) (ssbA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment