Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   EW022_RS07780 Genome accession   NZ_LR130240
Coordinates   1540419..1541105 (-) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS006 isolate PS006     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535419..1546105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW022_RS07760 dnaI 1536140..1537042 (-) 903 WP_011284517.1 primosomal protein DnaI -
  EW022_RS07765 - 1537043..1538218 (-) 1176 WP_002991019.1 replication initiation and membrane attachment family protein -
  EW022_RS07770 nrdR 1538202..1538696 (-) 495 WP_002985941.1 transcriptional regulator NrdR -
  EW022_RS07775 covS 1538911..1540413 (-) 1503 WP_011284516.1 two-component system sensor histidine kinase CovS -
  EW022_RS07780 covR 1540419..1541105 (-) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  EW022_RS07785 - 1541372..1541905 (-) 534 WP_011054200.1 YceD family protein -
  EW022_RS07790 htpX 1542139..1543035 (-) 897 WP_011284515.1 zinc metalloprotease HtpX -
  EW022_RS07795 - 1543082..1543639 (-) 558 WP_002985956.1 LemA family protein -
  EW022_RS07800 rsmG 1543789..1544502 (+) 714 WP_011054198.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  EW022_RS07805 ktrB 1544587..1545963 (+) 1377 WP_032459750.1 potassium uptake transporter channel subunit KtrB -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=1116748 EW022_RS07780 WP_002991052.1 1540419..1541105(-) (covR) [Streptococcus pyogenes strain PS006 isolate PS006]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1116748 EW022_RS07780 WP_002991052.1 1540419..1541105(-) (covR) [Streptococcus pyogenes strain PS006 isolate PS006]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
CGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCCGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment