Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW022_RS01805 Genome accession   NZ_LR130240
Coordinates   335505..335996 (+) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain PS006 isolate PS006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 330505..340996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW022_RS01775 - 331794..332294 (+) 501 WP_021340895.1 phosphatase PAP2 family protein -
  EW022_RS01780 trxA 332357..332689 (+) 333 WP_001932060.1 thioredoxin -
  EW022_RS01785 - 332741..333329 (-) 589 Protein_296 helix-turn-helix domain-containing protein -
  EW022_RS01790 mutY 333405..334559 (-) 1155 WP_011285126.1 A/G-specific adenine glycosylase -
  EW022_RS01795 - 334727..335020 (+) 294 WP_002983113.1 hypothetical protein -
  EW022_RS01800 rpsF 335193..335483 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  EW022_RS01805 ssb 335505..335996 (+) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  EW022_RS01810 rpsR 336161..336400 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  EW022_RS01815 - 336533..337189 (-) 657 WP_011285125.1 DUF1129 domain-containing protein -
  EW022_RS01820 - 337322..338266 (-) 945 WP_002983147.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=1116723 EW022_RS01805 WP_002983122.1 335505..335996(+) (ssb) [Streptococcus pyogenes strain PS006 isolate PS006]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1116723 EW022_RS01805 WP_002983122.1 335505..335996(+) (ssb) [Streptococcus pyogenes strain PS006 isolate PS006]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment