Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EQB41_RS11515 Genome accession   NZ_LR129840
Coordinates   2134497..2135159 (-) Length   220 a.a.
NCBI ID   WP_000649965.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129497..2140159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS11490 - 2129647..2129913 (-) 267 WP_001278167.1 Veg family protein -
  EQB41_RS11495 dnaB 2129915..2131267 (-) 1353 WP_000852486.1 replicative DNA helicase -
  EQB41_RS11500 rplI 2131311..2131763 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  EQB41_RS11505 - 2131760..2133733 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  EQB41_RS11510 hpf 2133869..2134417 (-) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EQB41_RS11515 comFC/cflB 2134497..2135159 (-) 663 WP_000649965.1 ComF family protein Machinery gene
  EQB41_RS11520 comFA/cflA 2135156..2136454 (-) 1299 WP_000867610.1 DEAD/DEAH box helicase Machinery gene
  EQB41_RS11525 - 2136510..2137145 (+) 636 WP_000395740.1 YigZ family protein -
  EQB41_RS11530 cysK 2137430..2138350 (+) 921 WP_000029860.1 cysteine synthase A -
  EQB41_RS11540 - 2138425..2138963 (-) 539 Protein_2142 transposase -
  EQB41_RS11545 - 2138936..2139223 (+) 288 Protein_2143 transposase -
  EQB41_RS11550 tnpB 2139359..2139592 (-) 234 WP_000376908.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25231.11 Da        Isoelectric Point: 7.7116

>NTDB_id=1116236 EQB41_RS11515 WP_000649965.1 2134497..2135159(-) (comFC/cflB) [Streptococcus pneumoniae strain 4496 isolate 4496]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQACQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1116236 EQB41_RS11515 WP_000649965.1 2134497..2135159(-) (comFC/cflB) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGCTTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae Rx1

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae D39

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae R6

98.636

100

0.986
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909

Multiple sequence alignment