Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQB41_RS10610 Genome accession   NZ_LR129840
Coordinates   1954311..1955264 (-) Length   317 a.a.
NCBI ID   WP_050237953.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949311..1960264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS10585 - 1950072..1950695 (-) 624 WP_044792021.1 hypothetical protein -
  EQB41_RS10590 jag 1950746..1951732 (-) 987 WP_000260009.1 RNA-binding cell elongation regulator Jag/EloR -
  EQB41_RS10595 - 1951751..1952575 (-) 825 WP_232019722.1 membrane protein insertase YidC -
  EQB41_RS10600 rnpA 1952550..1952921 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQB41_RS12675 - 1952938..1953069 (-) 132 WP_000768904.1 hypothetical protein -
  EQB41_RS10605 - 1953070..1954260 (-) 1191 WP_000167765.1 acetate kinase -
  EQB41_RS10610 comYH 1954311..1955264 (-) 954 WP_050237953.1 class I SAM-dependent methyltransferase Machinery gene
  EQB41_RS10615 - 1955325..1955919 (-) 595 Protein_1980 class I SAM-dependent methyltransferase -
  EQB41_RS10620 comGG/cglG 1956056..1956469 (-) 414 WP_050237955.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQB41_RS10625 comGF/cglF 1956447..1956908 (-) 462 WP_127820861.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQB41_RS10630 comGE/cglE 1956871..1957173 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQB41_RS10635 comGD/cglD 1957136..1957540 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQB41_RS10640 comGC/cglC 1957533..1957859 (-) 327 WP_050237957.1 comG operon protein ComGC Machinery gene
  EQB41_RS10645 comGB/cglB 1957861..1958877 (-) 1017 WP_127820862.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQB41_RS10650 comGA/cglA/cilD 1958825..1959766 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  EQB41_RS10655 - 1959842..1960207 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35709.84 Da        Isoelectric Point: 4.2052

>NTDB_id=1116223 EQB41_RS10610 WP_050237953.1 1954311..1955264(-) (comYH) [Streptococcus pneumoniae strain 4496 isolate 4496]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1116223 EQB41_RS10610 WP_050237953.1 1954311..1955264(-) (comYH) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment