Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E0E08_RS10745 Genome accession   NZ_LR027873
Coordinates   2069221..2069691 (-) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2070 isolate BPH2070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2064221..2074691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E08_RS10680 - 2064542..2064943 (-) 402 WP_000286968.1 hypothetical protein -
  E0E08_RS10685 rinB 2064944..2065117 (-) 174 WP_000595256.1 transcriptional activator RinB -
  E0E08_RS10690 - 2065114..2065320 (-) 207 WP_000195784.1 DUF1381 domain-containing protein -
  E0E08_RS10695 - 2065317..2065562 (-) 246 WP_001282077.1 hypothetical protein -
  E0E08_RS10700 - 2065599..2066135 (-) 537 WP_000185680.1 dUTPase -
  E0E08_RS10705 - 2066140..2066376 (-) 237 WP_001065023.1 DUF1024 family protein -
  E0E08_RS10710 - 2066369..2066653 (-) 285 WP_001105618.1 hypothetical protein -
  E0E08_RS10715 - 2066650..2067051 (-) 402 WP_000695766.1 hypothetical protein -
  E0E08_RS10720 - 2067064..2067306 (-) 243 WP_031784469.1 SAV1978 family virulence-associated passenger protein -
  E0E08_RS10725 - 2067310..2067678 (-) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  E0E08_RS10730 - 2067691..2068095 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  E0E08_RS10735 - 2068104..2068322 (-) 219 WP_000338528.1 hypothetical protein -
  E0E08_RS10740 - 2068329..2069191 (-) 863 Protein_1978 DnaD domain protein -
  E0E08_RS10745 ssbA 2069221..2069691 (-) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  E0E08_RS10750 - 2069692..2070309 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  E0E08_RS10755 - 2070390..2071310 (-) 921 WP_000138481.1 recombinase RecT -
  E0E08_RS10760 - 2071312..2073255 (-) 1944 WP_000700565.1 AAA family ATPase -
  E0E08_RS10765 - 2073264..2073527 (-) 264 WP_001205732.1 hypothetical protein -
  E0E08_RS10770 - 2073536..2073796 (-) 261 WP_000291101.1 DUF1108 family protein -
  E0E08_RS10775 - 2073893..2074054 (-) 162 WP_000048124.1 DUF1270 family protein -
  E0E08_RS10780 - 2074047..2074268 (-) 222 WP_000977378.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=1115887 E0E08_RS10745 WP_000934770.1 2069221..2069691(-) (ssbA) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1115887 E0E08_RS10745 WP_000934770.1 2069221..2069691(-) (ssbA) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment