Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PEPIB2_RS07130 Genome accession   NZ_LR027553
Coordinates   1483761..1484282 (-) Length   173 a.a.
NCBI ID   WP_065333942.1    Uniprot ID   -
Organism   Tritonibacter mobilis isolate EPIB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1478761..1489282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEPIB2_RS07120 (EPIB1_1437) - 1479669..1480982 (+) 1314 WP_126136909.1 HlyC/CorC family transporter -
  PEPIB2_RS07125 (EPIB1_1438) - 1481230..1483647 (+) 2418 WP_126136910.1 FAD-dependent oxidoreductase -
  PEPIB2_RS07130 (EPIB1_1439) ssb 1483761..1484282 (-) 522 WP_065333942.1 single-stranded DNA-binding protein Machinery gene
  PEPIB2_RS07135 (EPIB1_1440) - 1484552..1485127 (+) 576 WP_005617923.1 lytic transglycosylase domain-containing protein -
  PEPIB2_RS07140 (EPIB1_1441) - 1485327..1485665 (+) 339 WP_065321905.1 hypothetical protein -
  PEPIB2_RS07145 (EPIB1_1442) - 1485804..1486940 (+) 1137 WP_126136911.1 cytochrome-c peroxidase -
  PEPIB2_RS07150 (EPIB1_1443) - 1487069..1488484 (+) 1416 WP_009176204.1 tetratricopeptide repeat-containing sulfotransferase family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17942.54 Da        Isoelectric Point: 5.2795

>NTDB_id=1115739 PEPIB2_RS07130 WP_065333942.1 1483761..1484282(-) (ssb) [Tritonibacter mobilis isolate EPIB1]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQFLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGQGGGDYGGGGGGYGGGGSYGGGGGGGNQGGGFGGG
GPSQNIDDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1115739 PEPIB2_RS07130 WP_065333942.1 1483761..1484282(-) (ssb) [Tritonibacter mobilis isolate EPIB1]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATCGGCAACCTTGGCCGCGATCCGGAAGTGCGTAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCGACGTCGGAGACGTGGAAGGACCGCAACACCGGTGAGCGCCGTGAAAAAACCGAAT
GGCACTCTGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTCGCGGAGCAATTTCTGCGCAAAGGGTCCAAGGTCTACATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGGTATTCGACCGAAGTGGTGCTGCAAGGCTT
TGGCTCGACGCTCACCATGCTTGATGGTCGCGGCGAAGGTGGCGGCGGCGGTGGTCAAGGCGGCGGCGATTACGGTGGCG
GCGGTGGCGGCTACGGTGGTGGTGGCAGCTACGGCGGCGGCGGTGGCGGCGGCAACCAAGGCGGTGGCTTTGGTGGCGGT
GGCCCCTCGCAAAACATTGACGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.179

100

0.532
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.514
  ssb Neisseria gonorrhoeae MS11

40.884

100

0.428
  ssb Neisseria meningitidis MC58

40.884

100

0.428

Multiple sequence alignment