Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | TTHNP4_RS04850 | Genome accession | NZ_LR027517 |
| Coordinates | 863522..864742 (-) | Length | 406 a.a. |
| NCBI ID | WP_124104661.1 | Uniprot ID | A0A3P4ARD2 |
| Organism | Thermus thermophilus isolate TTHNAR1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 858522..869742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TTHNP4_RS04825 (TTHN1_00963) | - | 859141..860220 (+) | 1080 | WP_124104657.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| TTHNP4_RS04830 (TTHN1_00964) | - | 860205..861155 (-) | 951 | WP_124104658.1 | GGDEF domain-containing protein | - |
| TTHNP4_RS04835 (TTHN1_00965) | - | 861208..862563 (-) | 1356 | WP_014510165.1 | FAD-binding oxidoreductase | - |
| TTHNP4_RS04840 (TTHN1_00966) | - | 862573..863022 (-) | 450 | WP_124104659.1 | hypothetical protein | - |
| TTHNP4_RS04845 (TTHN1_00967) | - | 863095..863547 (+) | 453 | WP_124104660.1 | EVE domain-containing protein | - |
| TTHNP4_RS04850 (TTHN1_00968) | pilC | 863522..864742 (-) | 1221 | WP_124104661.1 | type II secretion system F family protein | Machinery gene |
| TTHNP4_RS04855 (TTHN1_00969) | - | 864741..865328 (+) | 588 | WP_124104662.1 | L-threonylcarbamoyladenylate synthase | - |
| TTHNP4_RS04860 (TTHN1_00970) | scpB | 865332..865865 (+) | 534 | WP_008632201.1 | SMC-Scp complex subunit ScpB | - |
| TTHNP4_RS04865 (TTHN1_00971) | - | 865809..866891 (-) | 1083 | WP_124104663.1 | PIG-L deacetylase family protein | - |
| TTHNP4_RS04870 (TTHN1_00972) | - | 866925..867551 (+) | 627 | WP_124104664.1 | GNAT family N-acetyltransferase | - |
| TTHNP4_RS04875 (TTHN1_00973) | - | 867561..868718 (+) | 1158 | WP_124104665.1 | acyl-CoA dehydrogenase family protein | - |
| TTHNP4_RS04880 (TTHN1_00974) | holA | 868753..869631 (+) | 879 | WP_124104666.1 | DNA polymerase III subunit delta | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44721.82 Da Isoelectric Point: 9.7003
>NTDB_id=1115721 TTHNP4_RS04850 WP_124104661.1 863522..864742(-) (pilC) [Thermus thermophilus isolate TTHNAR1]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGKGLQAEVRIPALERGPGLKDLAIFSRQLATMLGA
GLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSKFLQASTLPLLLLAVVLVFVYRWY
YGTPQGRKVIDRIKLRMPVFGDLNRKTAVARFSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGKGLQAEVRIPALERGPGLKDLAIFSRQLATMLGA
GLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSKFLQASTLPLLLLAVVLVFVYRWY
YGTPQGRKVIDRIKLRMPVFGDLNRKTAVARFSRTLALLLSSGVNIVEALDITKGTAGNSVVEEIVEAAKLKIQQGDPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTMLSKVADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=1115721 TTHNP4_RS04850 WP_124104661.1 863522..864742(-) (pilC) [Thermus thermophilus isolate TTHNAR1]
ATGCCGGTCTACCAGTATAAGGCCCGGGACCGCCAGGGCCGTCTGGTGGAGGCCACCATTGAGGCCGAGGACCTCCGCAC
CGCCGCGAGGCTCCTCCGCGACCGGGGCCTCTTCGTGGCCGAGATCAAGGAGCCGGGGAAGGGCCTGCAGGCGGAGGTCC
GGATCCCCGCTTTGGAGCGGGGGCCGGGCCTGAAGGACCTCGCCATCTTCTCCCGGCAACTCGCCACCATGCTGGGGGCG
GGGCTCACCCTCCTCCAGGCCCTCGCCATCCTGGAGCGCCAGACGGAGAACCGGAAGTTCCGGGAGATCCTCAAGCAGGT
GCGCACCGACGTGGAGGGGGGGATGGCCTTCTCCGAGGCCCTCTCCAAGCACAAGATCTTCTCCCGCCTCTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGCGGCCTGGACCTCATCCTGGACCGCTTGGCGAGCTTTCTGGAGAAGGAGCTGGAG
CTAAGGGGCAAGATCCGGAGCGCCATGACCTACCCGGTCATCGTCTTTGTCTTCGCCGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACGGATTTAGGCTCCGAGCTTCCCCTCCTCACCCGCTTCCTCATCG
CTGTATCCAAGTTCCTGCAGGCGTCCACCCTGCCCCTTCTCCTCCTGGCGGTGGTCCTGGTTTTCGTCTACCGCTGGTAC
TACGGCACCCCCCAGGGGCGGAAGGTCATTGACCGCATCAAGCTGCGCATGCCCGTCTTCGGCGACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGCACCCTGGCCCTCCTTCTCTCCAGCGGGGTGAACATCGTGGAGGCCCTGGACATCACCA
AGGGGACCGCGGGCAACAGCGTGGTGGAGGAGATCGTGGAGGCCGCCAAGCTGAAGATCCAGCAGGGCGACCCCTTGAAC
CTCACCCTGGCCCAGCACCCCTTCGTCTTCCCGCCTATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCCCT
GGACACCATGCTCTCCAAGGTGGCCGACTTCTATGAGCGGGAGGTGGACGAGGCGGTGGCGAGCCTCACCGCGGCCATTG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCCGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
ATGCCGGTCTACCAGTATAAGGCCCGGGACCGCCAGGGCCGTCTGGTGGAGGCCACCATTGAGGCCGAGGACCTCCGCAC
CGCCGCGAGGCTCCTCCGCGACCGGGGCCTCTTCGTGGCCGAGATCAAGGAGCCGGGGAAGGGCCTGCAGGCGGAGGTCC
GGATCCCCGCTTTGGAGCGGGGGCCGGGCCTGAAGGACCTCGCCATCTTCTCCCGGCAACTCGCCACCATGCTGGGGGCG
GGGCTCACCCTCCTCCAGGCCCTCGCCATCCTGGAGCGCCAGACGGAGAACCGGAAGTTCCGGGAGATCCTCAAGCAGGT
GCGCACCGACGTGGAGGGGGGGATGGCCTTCTCCGAGGCCCTCTCCAAGCACAAGATCTTCTCCCGCCTCTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGCGGCCTGGACCTCATCCTGGACCGCTTGGCGAGCTTTCTGGAGAAGGAGCTGGAG
CTAAGGGGCAAGATCCGGAGCGCCATGACCTACCCGGTCATCGTCTTTGTCTTCGCCGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACGGATTTAGGCTCCGAGCTTCCCCTCCTCACCCGCTTCCTCATCG
CTGTATCCAAGTTCCTGCAGGCGTCCACCCTGCCCCTTCTCCTCCTGGCGGTGGTCCTGGTTTTCGTCTACCGCTGGTAC
TACGGCACCCCCCAGGGGCGGAAGGTCATTGACCGCATCAAGCTGCGCATGCCCGTCTTCGGCGACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGCACCCTGGCCCTCCTTCTCTCCAGCGGGGTGAACATCGTGGAGGCCCTGGACATCACCA
AGGGGACCGCGGGCAACAGCGTGGTGGAGGAGATCGTGGAGGCCGCCAAGCTGAAGATCCAGCAGGGCGACCCCTTGAAC
CTCACCCTGGCCCAGCACCCCTTCGTCTTCCCGCCTATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCCCT
GGACACCATGCTCTCCAAGGTGGCCGACTTCTATGAGCGGGAGGTGGACGAGGCGGTGGCGAGCCTCACCGCGGCCATTG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCCGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
97.291 |
100 |
0.973 |
| pilC | Acinetobacter baylyi ADP1 |
37.656 |
98.768 |
0.372 |
| pilC | Pseudomonas stutzeri DSM 10701 |
36.908 |
98.768 |
0.365 |