Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EC1639_RS01860 Genome accession   NZ_LR025101
Coordinates   408247..408783 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate EC-1639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403247..413783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1639_RS01840 (EC1639_00381) aphA 403535..404248 (+) 714 WP_001226928.1 acid phosphatase AphA -
  EC1639_RS01845 (EC1639_00382) yjbQ 404359..404775 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EC1639_RS01850 (EC1639_00383) yjbR 404779..405135 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EC1639_RS01855 (EC1639_00384) uvrA 405170..407992 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  EC1639_RS01860 (EC1639_00385) ssb 408247..408783 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EC1639_RS01865 (EC1639_00386) yjcB 408882..409163 (-) 282 WP_001295689.1 YjcB family protein -
  EC1639_RS01870 (EC1639_00387) pdeC 409593..411179 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  EC1639_RS01875 (EC1639_00388) soxS 411182..411505 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EC1639_RS01880 (EC1639_00389) soxR 411591..412055 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1115657 EC1639_RS01860 WP_000168305.1 408247..408783(+) (ssb) [Escherichia coli isolate EC-1639]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1115657 EC1639_RS01860 WP_000168305.1 408247..408783(+) (ssb) [Escherichia coli isolate EC-1639]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment