Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BAMMD1_RS11090 Genome accession   NZ_LN999829
Coordinates   2396967..2397275 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain B25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2391967..2402275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS11040 (BAMMD1_2222) sinR 2392132..2392467 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAMMD1_RS11045 (BAMMD1_2223) tasA 2392515..2393300 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  BAMMD1_RS11050 (BAMMD1_2224) sipW 2393364..2393948 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BAMMD1_RS11055 (BAMMD1_2225) tapA 2393920..2394591 (-) 672 WP_058906184.1 amyloid fiber anchoring/assembly protein TapA -
  BAMMD1_RS11060 (BAMMD1_2227) - 2394850..2395179 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BAMMD1_RS11065 (BAMMD1_2228) - 2395219..2395398 (-) 180 WP_003153093.1 YqzE family protein -
  BAMMD1_RS11070 (BAMMD1_2229) comGG 2395455..2395832 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMMD1_RS11075 (BAMMD1_2230) comGF 2395833..2396228 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  BAMMD1_RS11080 (BAMMD1_2231) comGE 2396242..2396556 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAMMD1_RS11085 (BAMMD1_2232) comGD 2396540..2396977 (-) 438 WP_060387053.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMMD1_RS11090 (BAMMD1_2233) comGC 2396967..2397275 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  BAMMD1_RS11095 (BAMMD1_2234) comGB 2397280..2398317 (-) 1038 WP_058906186.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAMMD1_RS11100 (BAMMD1_2235) comGA 2398304..2399374 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  BAMMD1_RS11105 (BAMMD1_2236) - 2399566..2400516 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  BAMMD1_RS11110 (BAMMD1_2237) - 2400662..2401963 (+) 1302 WP_058906187.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=1115429 BAMMD1_RS11090 WP_003153087.1 2396967..2397275(-) (comGC) [Bacillus velezensis strain B25]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1115429 BAMMD1_RS11090 WP_003153087.1 2396967..2397275(-) (comGC) [Bacillus velezensis strain B25]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACTATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment