Detailed information NTG1115428

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: BAMMD1_RS11085
• Genome accession: NZ_LN999829
• Coordinates: 2396540..2396977 (-)
• Length: 145 a.a.
• NCBI ID: WP_060387053.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B25
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2391540..2401977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMMD1_RS11035 (BAMMD1_2221)	sinI	2391925..2392098 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
BAMMD1_RS11040 (BAMMD1_2222)	sinR	2392132..2392467 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
BAMMD1_RS11045 (BAMMD1_2223)	tasA	2392515..2393300 (-)	786	WP_015388008.1	biofilm matrix protein TasA	-
BAMMD1_RS11050 (BAMMD1_2224)	sipW	2393364..2393948 (-)	585	WP_012117977.1	signal peptidase I SipW	-
BAMMD1_RS11055 (BAMMD1_2225)	tapA	2393920..2394591 (-)	672	WP_058906184.1	amyloid fiber anchoring/assembly protein TapA	-
BAMMD1_RS11060 (BAMMD1_2227)	-	2394850..2395179 (+)	330	WP_003153097.1	DUF3889 domain-containing protein	-
BAMMD1_RS11065 (BAMMD1_2228)	-	2395219..2395398 (-)	180	WP_003153093.1	YqzE family protein	-
BAMMD1_RS11070 (BAMMD1_2229)	comGG	2395455..2395832 (-)	378	WP_015388005.1	competence type IV pilus minor pilin ComGG	Machinery gene
BAMMD1_RS11075 (BAMMD1_2230)	comGF	2395833..2396228 (-)	396	WP_015388004.1	competence type IV pilus minor pilin ComGF	-
BAMMD1_RS11080 (BAMMD1_2231)	comGE	2396242..2396556 (-)	315	WP_015388003.1	competence type IV pilus minor pilin ComGE	Machinery gene
BAMMD1_RS11085 (BAMMD1_2232)	comGD	2396540..2396977 (-)	438	WP_060387053.1	competence type IV pilus minor pilin ComGD	Machinery gene
BAMMD1_RS11090 (BAMMD1_2233)	comGC	2396967..2397275 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
BAMMD1_RS11095 (BAMMD1_2234)	comGB	2397280..2398317 (-)	1038	WP_058906186.1	competence type IV pilus assembly protein ComGB	Machinery gene
BAMMD1_RS11100 (BAMMD1_2235)	comGA	2398304..2399374 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
BAMMD1_RS11105 (BAMMD1_2236)	-	2399566..2400516 (-)	951	WP_003153082.1	magnesium transporter CorA family protein	-
BAMMD1_RS11110 (BAMMD1_2237)	-	2400662..2401963 (+)	1302	WP_058906187.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16296.80 Da
• Isoelectric Point: 10.3725

>NTDB_id=1115428 BAMMD1_RS11085 WP_060387053.1 2396540..2396977(-) (comGD) [Bacillus velezensis strain B25]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGRIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1115428 BAMMD1_RS11085 WP_060387053.1 2396540..2396977(-) (comGD) [Bacillus velezensis strain B25]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTTGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAGGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	55.479	100	0.559