Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAMMD1_RS11040 Genome accession   NZ_LN999829
Coordinates   2392132..2392467 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain B25     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387132..2397467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS11020 (BAMMD1_2217) gcvT 2387743..2388843 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  BAMMD1_RS11025 (BAMMD1_2219) - 2389266..2390936 (+) 1671 WP_058906183.1 DEAD/DEAH box helicase -
  BAMMD1_RS11030 (BAMMD1_2220) - 2390954..2391748 (+) 795 WP_014305407.1 YqhG family protein -
  BAMMD1_RS11035 (BAMMD1_2221) sinI 2391925..2392098 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BAMMD1_RS11040 (BAMMD1_2222) sinR 2392132..2392467 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAMMD1_RS11045 (BAMMD1_2223) tasA 2392515..2393300 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  BAMMD1_RS11050 (BAMMD1_2224) sipW 2393364..2393948 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BAMMD1_RS11055 (BAMMD1_2225) tapA 2393920..2394591 (-) 672 WP_058906184.1 amyloid fiber anchoring/assembly protein TapA -
  BAMMD1_RS11060 (BAMMD1_2227) - 2394850..2395179 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BAMMD1_RS11065 (BAMMD1_2228) - 2395219..2395398 (-) 180 WP_003153093.1 YqzE family protein -
  BAMMD1_RS11070 (BAMMD1_2229) comGG 2395455..2395832 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAMMD1_RS11075 (BAMMD1_2230) comGF 2395833..2396228 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  BAMMD1_RS11080 (BAMMD1_2231) comGE 2396242..2396556 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAMMD1_RS11085 (BAMMD1_2232) comGD 2396540..2396977 (-) 438 WP_060387053.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAMMD1_RS11090 (BAMMD1_2233) comGC 2396967..2397275 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1115425 BAMMD1_RS11040 WP_003153104.1 2392132..2392467(+) (sinR) [Bacillus velezensis strain B25]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1115425 BAMMD1_RS11040 WP_003153104.1 2392132..2392467(+) (sinR) [Bacillus velezensis strain B25]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment