Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVIRIDIS_RS05535 Genome accession   NZ_LN907867
Coordinates   1262898..1263392 (-) Length   164 a.a.
NCBI ID   WP_055037253.1    Uniprot ID   -
Organism   Blastochloris viridis isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1257898..1268392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVIRIDIS_RS05530 (BVIRIDIS_11410) - 1261000..1262757 (-) 1758 WP_055037252.1 sensor histidine kinase -
  BVIRIDIS_RS05535 (BVIRIDIS_11420) ssb 1262898..1263392 (-) 495 WP_055037253.1 single-stranded DNA-binding protein Machinery gene
  BVIRIDIS_RS05540 (BVIRIDIS_11430) uvrA 1263901..1266927 (+) 3027 WP_055037254.1 excinuclease ABC subunit UvrA -
  BVIRIDIS_RS17300 - 1266994..1267128 (+) 135 WP_257720199.1 hypothetical protein -
  BVIRIDIS_RS05545 (BVIRIDIS_11440) - 1267211..1267858 (-) 648 WP_055037255.1 glutathione S-transferase N-terminal domain-containing protein -
  BVIRIDIS_RS05550 (BVIRIDIS_11450) - 1267970..1268371 (-) 402 WP_082417364.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17936.98 Da        Isoelectric Point: 7.0238

>NTDB_id=1115272 BVIRIDIS_RS05535 WP_055037253.1 1262898..1263392(-) (ssb) [Blastochloris viridis isolate]
MAGSVNKVILVGNLGRDPEVRRLNSGESVVNLRIATSESWRDKATGERRERTEWHSVVIFNEQLAKVAEQYLKKGAKVYI
EGQLQTRKWQDQAGAEKYTTEVVLQRFRGELQMLDGRGGGGGAEIEDSGDFGQRSPLPARGAARPAASGGGGKYSSDLDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1115272 BVIRIDIS_RS05535 WP_055037253.1 1262898..1263392(-) (ssb) [Blastochloris viridis isolate]
ATGGCGGGCAGCGTCAATAAAGTCATCCTGGTCGGCAATCTCGGGCGTGACCCGGAAGTCCGCCGGCTGAACTCGGGCGA
GAGCGTGGTCAACCTCAGGATCGCGACCTCGGAAAGCTGGCGCGACAAGGCGACCGGCGAGCGGCGCGAGCGCACCGAGT
GGCACTCGGTGGTGATCTTCAACGAGCAGCTTGCCAAAGTCGCCGAGCAGTACCTGAAGAAGGGCGCCAAAGTTTACATT
GAGGGCCAGCTGCAGACCCGTAAATGGCAAGACCAGGCGGGGGCGGAAAAGTACACCACCGAGGTGGTGCTGCAGCGTTT
CCGCGGCGAATTGCAGATGCTCGACGGGCGCGGCGGCGGTGGCGGCGCGGAGATCGAGGACAGCGGCGACTTCGGCCAGC
GCAGCCCGCTGCCGGCCCGCGGTGCCGCCCGCCCGGCGGCCTCCGGCGGCGGCGGCAAGTATTCAAGCGACCTGGACGAC
GAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.429

100

0.549
  ssb Neisseria gonorrhoeae MS11

42.162

100

0.476
  ssb Neisseria meningitidis MC58

40.761

100

0.457
  ssb Glaesserella parasuis strain SC1401

61.475

74.39

0.457

Multiple sequence alignment