Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABR2090_RS13670 Genome accession   NZ_LN868200
Coordinates   2838186..2838512 (-) Length   108 a.a.
NCBI ID   WP_058222113.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2829016..2843160 2838186..2838512 within 0


Gene organization within MGE regions


Location: 2829016..2843160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS13635 - 2829016..2829967 (-) 952 Protein_2700 hypothetical protein -
  ABR2090_RS13640 (ABR2090_2753) - 2830249..2831166 (-) 918 WP_000529713.1 GIY-YIG nuclease family protein -
  ABR2090_RS13645 (ABR2090_2754) - 2831295..2831882 (-) 588 WP_005129412.1 hypothetical protein -
  ABR2090_RS13650 (ABR2090_2755) - 2832135..2832566 (-) 432 WP_005129415.1 hypothetical protein -
  ABR2090_RS13655 (ABR2090_2756) - 2834961..2835899 (-) 939 WP_058222110.1 hypothetical protein -
  ABR2090_RS13665 (ABR2090_2757) fic 2836792..2837901 (-) 1110 WP_058222112.1 protein adenylyltransferase Fic -
  ABR2090_RS13670 (ABR2090_2758) ssb 2838186..2838512 (-) 327 WP_058222113.1 single-stranded DNA-binding protein Machinery gene
  ABR2090_RS13675 (ABR2090_2759) - 2838844..2841309 (-) 2466 WP_001022395.1 DUF927 domain-containing protein -
  ABR2090_RS13680 (ABR2090_2760) - 2841322..2841600 (-) 279 WP_001064707.1 hypothetical protein -
  ABR2090_RS13685 (ABR2090_2762) - 2841715..2842029 (-) 315 WP_000787150.1 hypothetical protein -
  ABR2090_RS13690 (ABR2090_2763) - 2842039..2842407 (-) 369 WP_001046481.1 hypothetical protein -
  ABR2090_RS13695 (ABR2090_2764) - 2842400..2842954 (-) 555 WP_001988245.1 BRO family protein -
  ABR2090_RS13700 (ABR2090_2765) - 2842951..2843160 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12194.96 Da        Isoelectric Point: 10.3517

>NTDB_id=1114827 ABR2090_RS13670 WP_058222113.1 2838186..2838512(-) (ssb) [Acinetobacter baumannii isolate R2090]
MPNVKKVTVMGVLGLNPETKQFSNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1114827 ABR2090_RS13670 WP_058222113.1 2838186..2838512(-) (ssb) [Acinetobacter baumannii isolate R2090]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CGTTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.778

100

0.528
  ssb Neisseria gonorrhoeae MS11

48.113

98.148

0.472
  ssb Neisseria meningitidis MC58

48.113

98.148

0.472
  ssb Vibrio cholerae strain A1552

51.546

89.815

0.463

Multiple sequence alignment