Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A66_RS10060 Genome accession   NZ_LN847353
Coordinates   1921750..1922412 (-) Length   220 a.a.
NCBI ID   WP_000649974.1    Uniprot ID   A0A0F7YBW3
Organism   Streptococcus pneumoniae strain A66     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1916750..1927412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A66_RS10035 (A66_02003) - 1916900..1917166 (-) 267 WP_001278167.1 Veg family protein -
  A66_RS10040 (A66_02004) dnaB 1917168..1918520 (-) 1353 WP_000852486.1 replicative DNA helicase -
  A66_RS10045 (A66_02005) rplI 1918564..1919016 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  A66_RS10050 (A66_02006) - 1919013..1920986 (-) 1974 WP_053039811.1 DHH family phosphoesterase -
  A66_RS10055 (A66_02007) hpf 1921122..1921670 (-) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A66_RS10060 (A66_02008) comFC/cflB 1921750..1922412 (-) 663 WP_000649974.1 ComF family protein Machinery gene
  A66_RS10065 (A66_02009) comFA/cflA 1922409..1923707 (-) 1299 WP_000867601.1 DEAD/DEAH box helicase Machinery gene
  A66_RS10070 (A66_02010) - 1923763..1924398 (+) 636 WP_000395739.1 YigZ family protein -
  A66_RS10075 (A66_02011) cysK 1924683..1925603 (+) 921 WP_000029860.1 cysteine synthase A -
  A66_RS13030 - 1925891..1926953 (-) 1063 Protein_1960 transposase -
  A66_RS10090 (A66_02014) - 1926953..1927225 (+) 273 Protein_1961 transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25169.03 Da        Isoelectric Point: 7.7116

>NTDB_id=1114612 A66_RS10060 WP_000649974.1 1921750..1922412(-) (comFC/cflB) [Streptococcus pneumoniae strain A66]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1114612 A66_RS10060 WP_000649974.1 1921750..1922412(-) (comFC/cflB) [Streptococcus pneumoniae strain A66]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7YBW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

100

100

1
  comFC/cflB Streptococcus pneumoniae D39

100

100

1
  comFC/cflB Streptococcus pneumoniae R6

100

100

1
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909

Multiple sequence alignment