Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCOS191_RS24370 Genome accession   NZ_LN847264
Coordinates   5459640..5460188 (-) Length   182 a.a.
NCBI ID   WP_023629920.1    Uniprot ID   -
Organism   Pseudomonas sp. CCOS 191     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5454640..5465188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCOS191_RS24350 (CCOS191_4833) fdxH 5454803..5455753 (-) 951 WP_046857337.1 formate dehydrogenase subunit beta -
  CCOS191_RS24355 (CCOS191_4834) fdnG 5455753..5458821 (-) 3069 WP_156177703.1 formate dehydrogenase-N subunit alpha -
  CCOS191_RS24365 (CCOS191_4836) - 5459057..5459551 (+) 495 WP_231867457.1 heme-binding protein -
  CCOS191_RS24370 (CCOS191_4837) ssb 5459640..5460188 (-) 549 WP_023629920.1 single-stranded DNA-binding protein Machinery gene
  CCOS191_RS24375 (CCOS191_4838) - 5460198..5461592 (-) 1395 WP_046857339.1 MFS transporter -
  CCOS191_RS24380 (CCOS191_4839) uvrA 5461722..5464556 (+) 2835 WP_046857340.1 excinuclease ABC subunit UvrA -
  CCOS191_RS24385 (CCOS191_4840) bfr 5464629..5465093 (-) 465 WP_046857341.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20221.27 Da        Isoelectric Point: 5.9286

>NTDB_id=1114537 CCOS191_RS24370 WP_023629920.1 5459640..5460188(-) (ssb) [Pseudomonas sp. CCOS 191]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGGDQYNQGGGNNYNQGGQQQQYNQAPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1114537 CCOS191_RS24370 WP_023629920.1 5459640..5460188(-) (ssb) [Pseudomonas sp. CCOS 191]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGTGTCTCGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGGCGACCAGTACAACCAGGGTGGTGGCAACAACTACA
ACCAGGGCGGTCAGCAGCAACAGTACAACCAGGCCCCGCGCCAGCAGGCCCAGCGCCCGCAACAAGCGCCGCAGCGCCCA
GCGCCGCAACAGCCGGCTCCGCAGCCTGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.738

100

0.56
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.516
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.489
  ssb Neisseria meningitidis MC58

48.108

100

0.489

Multiple sequence alignment