Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AT689_RS02855 Genome accession   NZ_LN831051
Coordinates   529843..530505 (+) Length   220 a.a.
NCBI ID   WP_000649975.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524843..535505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS02825 (ERS445053_00557) tnpB 525314..525601 (+) 288 WP_000973412.1 IS66 family insertion sequence element accessory protein TnpB -
  AT689_RS12380 - 525792..526063 (-) 272 Protein_556 transposase -
  AT689_RS02835 (ERS445053_00558) - 526063..526577 (+) 515 Protein_557 transposase -
  AT689_RS02840 (ERS445053_00559) cysK 526652..527572 (-) 921 WP_000029860.1 cysteine synthase A -
  AT689_RS02845 (ERS445053_00560) - 527857..528492 (-) 636 WP_000395739.1 YigZ family protein -
  AT689_RS02850 (ERS445053_00561) comFA/cflA 528548..529846 (+) 1299 WP_000867601.1 DEAD/DEAH box helicase Machinery gene
  AT689_RS02855 (ERS445053_00562) comFC/cflB 529843..530505 (+) 663 WP_000649975.1 ComF family protein Machinery gene
  AT689_RS02860 (ERS445053_00563) hpf 530585..531133 (+) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AT689_RS02865 (ERS445053_00564) - 531269..533242 (+) 1974 WP_000715109.1 DHH family phosphoesterase -
  AT689_RS02870 (ERS445053_00565) rplI 533239..533691 (+) 453 WP_000864220.1 50S ribosomal protein L9 -
  AT689_RS02875 (ERS445053_00566) dnaB 533735..535087 (+) 1353 WP_000852486.1 replicative DNA helicase -
  AT689_RS02880 (ERS445053_00567) - 535089..535355 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25197.09 Da        Isoelectric Point: 7.7116

>NTDB_id=1114358 AT689_RS02855 WP_000649975.1 529843..530505(+) (comFC/cflB) [Streptococcus pneumoniae strain NCTC7465]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEVAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1114358 AT689_RS02855 WP_000649975.1 529843..530505(+) (comFC/cflB) [Streptococcus pneumoniae strain NCTC7465]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGTAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCCGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909
  comFC/cflB Streptococcus mitis SK321

90.455

100

0.905

Multiple sequence alignment