Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VV28_RS12860 Genome accession   NZ_LN680001
Coordinates   2575262..2575693 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS34A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570262..2580693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS12810 (BS34A_26990) sinI 2570456..2570629 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  VV28_RS12815 (BS34A_27000) sinR 2570663..2570998 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  VV28_RS12820 (BS34A_27010) tasA 2571091..2571876 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  VV28_RS12825 (BS34A_27020) sipW 2571940..2572512 (-) 573 WP_003246088.1 signal peptidase I SipW -
  VV28_RS12830 (BS34A_27030) tapA 2572496..2573257 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  VV28_RS12835 (BS34A_27040) yqzG 2573529..2573855 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  VV28_RS12840 (BS34A_27050) spoIITA 2573897..2574076 (-) 180 WP_003230176.1 YqzE family protein -
  VV28_RS12845 (BS34A_27060) comGG 2574147..2574521 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  VV28_RS12850 (BS34A_27070) comGF 2574522..2574905 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  VV28_RS12855 (BS34A_27080) comGE 2574931..2575278 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  VV28_RS12860 (BS34A_27090) comGD 2575262..2575693 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  VV28_RS12865 (BS34A_27100) comGC 2575683..2575979 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  VV28_RS12870 (BS34A_27110) comGB 2575993..2577030 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  VV28_RS12875 (BS34A_27120) comGA 2577017..2578087 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  VV28_RS12880 (BS34A_27140) corA 2578499..2579452 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=1113874 VV28_RS12860 WP_004398628.1 2575262..2575693(-) (comGD) [Bacillus subtilis strain BS34A]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1113874 VV28_RS12860 WP_004398628.1 2575262..2575693(-) (comGD) [Bacillus subtilis strain BS34A]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment