Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   VV28_RS12815 Genome accession   NZ_LN680001
Coordinates   2570663..2570998 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain BS34A     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2565663..2575998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS12795 (BS34A_26950) gcvT 2566255..2567343 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  VV28_RS12800 (BS34A_26970) hepAA 2567785..2569458 (+) 1674 WP_004398544.1 SNF2-related protein -
  VV28_RS12805 (BS34A_26980) yqhG 2569479..2570273 (+) 795 WP_003230200.1 YqhG family protein -
  VV28_RS12810 (BS34A_26990) sinI 2570456..2570629 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  VV28_RS12815 (BS34A_27000) sinR 2570663..2570998 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  VV28_RS12820 (BS34A_27010) tasA 2571091..2571876 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  VV28_RS12825 (BS34A_27020) sipW 2571940..2572512 (-) 573 WP_003246088.1 signal peptidase I SipW -
  VV28_RS12830 (BS34A_27030) tapA 2572496..2573257 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  VV28_RS12835 (BS34A_27040) yqzG 2573529..2573855 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  VV28_RS12840 (BS34A_27050) spoIITA 2573897..2574076 (-) 180 WP_003230176.1 YqzE family protein -
  VV28_RS12845 (BS34A_27060) comGG 2574147..2574521 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  VV28_RS12850 (BS34A_27070) comGF 2574522..2574905 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  VV28_RS12855 (BS34A_27080) comGE 2574931..2575278 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  VV28_RS12860 (BS34A_27090) comGD 2575262..2575693 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  VV28_RS12865 (BS34A_27100) comGC 2575683..2575979 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1113870 VV28_RS12815 WP_003226345.1 2570663..2570998(+) (sinR) [Bacillus subtilis strain BS34A]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1113870 VV28_RS12815 WP_003226345.1 2570663..2570998(+) (sinR) [Bacillus subtilis strain BS34A]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment