Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SRS_RS07395 Genome accession   NZ_LN626917
Coordinates   1489362..1489865 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1484362..1494865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS07365 - 1485205..1485972 (+) 768 Protein_1442 ABC transporter permease -
  SRS_RS15115 - 1487629..1487928 (+) 300 Protein_1444 tyrosine-type recombinase/integrase -
  SRS_RS07385 - 1487930..1488829 (+) 900 WP_045179037.1 Abi family protein -
  SRS_RS07390 rpsR 1489068..1489310 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  SRS_RS07395 ssbA 1489362..1489865 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SRS_RS07400 rpsF 1489886..1490182 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  SRS_RS07405 - 1490426..1490617 (+) 192 WP_001052483.1 hypothetical protein -
  SRS_RS07410 ychF 1490703..1491800 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  SRS_RS07415 - 1491812..1492015 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  SRS_RS07420 - 1492045..1492926 (-) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  SRS_RS07425 - 1493080..1493925 (-) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1113683 SRS_RS07395 WP_000934799.1 1489362..1489865(-) (ssbA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1113683 SRS_RS07395 WP_000934799.1 1489362..1489865(-) (ssbA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment