Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LFA_RS12675 Genome accession   NZ_LN614827
Coordinates   3074300..3074782 (+) Length   160 a.a.
NCBI ID   WP_045096528.1    Uniprot ID   -
Organism   Legionella fallonii LLAP-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3069300..3079782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS12655 (LFA_2778) - 3070350..3071243 (-) 894 WP_045096524.1 hydroxymyristoyl-ACP dehydratase -
  LFA_RS12660 (LFA_2779) - 3071243..3071656 (-) 414 WP_045096525.1 acyl carrier protein -
  LFA_RS12665 (LFA_2780) fabL 3071752..3072507 (-) 756 WP_045096526.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LFA_RS12670 (LFA_2781) - 3072851..3074215 (+) 1365 WP_045096527.1 MFS transporter -
  LFA_RS12675 (LFA_2782) ssb 3074300..3074782 (+) 483 WP_045096528.1 single-stranded DNA-binding protein Machinery gene
  LFA_RS12680 (LFA_2783) rplQ 3075203..3075586 (-) 384 WP_045096529.1 50S ribosomal protein L17 -
  LFA_RS12685 (LFA_2784) - 3075605..3076597 (-) 993 WP_045096530.1 DNA-directed RNA polymerase subunit alpha -
  LFA_RS12690 (LFA_2785) rpsD 3076616..3077236 (-) 621 WP_045096531.1 30S ribosomal protein S4 -
  LFA_RS12695 (LFA_2786) rpsK 3077253..3077651 (-) 399 WP_003633055.1 30S ribosomal protein S11 -
  LFA_RS12700 (LFA_2787) rpsM 3077673..3078029 (-) 357 WP_045096532.1 30S ribosomal protein S13 -
  LFA_RS19535 (LFA_4038) rpmJ 3078108..3078221 (-) 114 WP_078061441.1 50S ribosomal protein L36 -
  LFA_RS12705 (LFA_2788) secY 3078240..3079568 (-) 1329 WP_045096533.1 preprotein translocase subunit SecY -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17937.77 Da        Isoelectric Point: 4.9675

>NTDB_id=1113630 LFA_RS12675 WP_045096528.1 3074300..3074782(+) (ssb) [Legionella fallonii LLAP-10]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSESWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYLRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGGGNSSFNYDDVPQMQQSAPTHQQNANKQQSPQAAQDAFDQLDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1113630 LFA_RS12675 WP_045096528.1 3074300..3074782(+) (ssb) [Legionella fallonii LLAP-10]
ATGGCAAGAGGAATAAATAAAGTAATATTAATTGGTAATGTGGGAGTAGATCCTGATGTTCGTTATTTACCAAATGGCAA
TGCAGTAACCACCCTGTCCATTGCTACCAGTGAATCATGGAAGGATAAGACTACAGGCGAAAAGCAAGATCGTACTGAGT
GGCATCGTGTAGTTTGCTTCAATCGTTTAGGTGAAATTGCTGGAGAGTATCTCCGTAAAGGTTCTAAGCTTTATGTTGAA
GGTAGCTTACGAACACGTAAATGGCAAGATCAGCAAGGTCAGGACAGATATACGACTGAAATCGTTGCCTCAGACATTCA
AATGCTTGATAGTAAAGGGGGAGGCAACAGTTCATTTAATTATGATGATGTACCGCAAATGCAACAATCTGCGCCAACAC
ATCAACAAAATGCGAATAAACAACAATCGCCACAAGCAGCACAAGATGCATTCGATCAGTTGGACGATGATATTCCTTTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.841

100

0.581
  ssb Glaesserella parasuis strain SC1401

51.685

100

0.575
  ssb Neisseria meningitidis MC58

41.04

100

0.444
  ssb Neisseria gonorrhoeae MS11

40.462

100

0.437

Multiple sequence alignment