Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LFA_RS06990 Genome accession   NZ_LN614827
Coordinates   1723654..1724517 (+) Length   287 a.a.
NCBI ID   WP_045095548.1    Uniprot ID   A0A098G641
Organism   Legionella fallonii LLAP-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718654..1729517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS06970 (LFA_1560) - 1718953..1719279 (-) 327 WP_045095544.1 DUF1820 family protein -
  LFA_RS06975 (LFA_1561) - 1719414..1720145 (-) 732 WP_045095545.1 methyltransferase domain-containing protein -
  LFA_RS06980 (LFA_1563) pilB 1720667..1722388 (+) 1722 WP_045095546.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LFA_RS06985 (LFA_1564) pilC 1722393..1723613 (+) 1221 WP_045095547.1 type II secretion system F family protein Machinery gene
  LFA_RS06990 (LFA_1565) pilD 1723654..1724517 (+) 864 WP_045095548.1 A24 family peptidase Machinery gene
  LFA_RS06995 (LFA_1566) - 1724749..1724991 (+) 243 WP_045095549.1 hypothetical protein -
  LFA_RS07000 (LFA_1567) - 1724988..1725431 (+) 444 WP_065814366.1 hypothetical protein -
  LFA_RS07005 (LFA_1568) - 1725463..1725621 (+) 159 WP_157010307.1 hypothetical protein -
  LFA_RS07010 (LFA_1569) - 1725707..1726609 (-) 903 WP_084602133.1 branched-chain amino acid transaminase -
  LFA_RS07015 (LFA_1570) - 1726795..1728477 (-) 1683 WP_045095552.1 hypothetical protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32814.34 Da        Isoelectric Point: 8.2938

>NTDB_id=1113615 LFA_RS06990 WP_045095548.1 1723654..1724517(+) (pilD) [Legionella fallonii LLAP-10]
MIQELIATSPWFIYLVIALLSLTVGSLLNVVIYRLPIMLQNEWKQQCCELFAIKEEELKSNINLFFPRSFCPHCKSLVRA
WQNIPLVSYLLLRGRCHQCHHPISIRYPLIELLTLLLSLYASWHFGLTLQLPFALLGIWLLICLIFIDLDHQLLPDNLTL
SLLWVGLIANTQNLFTTLPIAVLSAVAAYISLWLFIKLFYLITGKIGMGHGDFKLFAAFGAWFGWQYLPLILLFSSITGA
IIGSIYLSVNNKSKETTIPFGPFLCIAGLASMFWGQAIINWYLRLWF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1113615 LFA_RS06990 WP_045095548.1 1723654..1724517(+) (pilD) [Legionella fallonii LLAP-10]
ATGATACAAGAGCTCATCGCAACCAGCCCATGGTTTATTTATTTAGTCATTGCCCTATTGTCATTGACTGTAGGTAGCTT
GTTAAACGTAGTTATCTATCGTTTACCTATTATGTTACAAAATGAATGGAAGCAGCAGTGCTGTGAATTATTCGCCATTA
AAGAAGAAGAACTCAAATCGAATATTAATCTTTTTTTCCCCAGATCATTTTGCCCTCACTGTAAAAGCTTAGTTAGAGCC
TGGCAGAACATTCCGCTAGTAAGTTATTTACTTTTGAGAGGACGATGTCATCAATGCCATCACCCTATTTCTATTAGATA
TCCTTTAATTGAGCTATTAACTTTATTATTGTCATTGTATGCCAGTTGGCACTTTGGATTGACCTTACAGCTTCCTTTTG
CATTACTAGGAATTTGGTTATTAATCTGTTTAATTTTTATTGACTTAGATCATCAATTATTACCAGATAATCTTACTTTA
AGTTTGCTTTGGGTAGGCCTTATTGCTAATACTCAAAATCTATTTACCACGCTCCCTATCGCGGTATTAAGCGCCGTTGC
TGCTTATATTAGCCTTTGGCTTTTTATTAAATTATTTTACTTGATCACCGGAAAAATAGGCATGGGGCACGGCGATTTTA
AATTATTCGCTGCATTTGGTGCCTGGTTTGGCTGGCAGTATTTACCTCTAATCCTTTTATTTTCTTCAATTACCGGCGCT
ATTATTGGCTCAATCTACCTAAGTGTAAATAATAAATCGAAGGAAACGACCATCCCATTTGGCCCATTTCTTTGTATAGC
AGGACTAGCTTCTATGTTTTGGGGACAAGCTATTATTAATTGGTATTTACGATTATGGTTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)

Type IV leader peptidase family (Peptidase_A24)

(136-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098G641

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

47.44

100

0.484
  pilD Acinetobacter nosocomialis M2

48.057

98.606

0.474
  pilD Acinetobacter baumannii D1279779

47.703

98.606

0.47
  pilD Vibrio campbellii strain DS40M4

46.263

97.909

0.453
  pilD Neisseria gonorrhoeae MS11

46.269

93.38

0.432

Multiple sequence alignment