Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN1079_RS14770 Genome accession   NZ_CCSF01000001
Coordinates   3178690..3179178 (+) Length   162 a.a.
NCBI ID   WP_037025779.1    Uniprot ID   -
Organism   Pseudomonas saudiphocaensis strain 20_BN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3173690..3184178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN1079_RS14760 (BN1079_03029) uvrA 3173987..3176824 (-) 2838 WP_037025775.1 excinuclease ABC subunit UvrA -
  BN1079_RS14765 (BN1079_03030) - 3177125..3178492 (+) 1368 WP_037025778.1 MFS transporter -
  BN1079_RS14770 (BN1079_03031) ssb 3178690..3179178 (+) 489 WP_037025779.1 single-stranded DNA-binding protein Machinery gene
  BN1079_RS14775 (BN1079_03032) - 3179191..3180075 (+) 885 WP_037025780.1 sugar nucleotide-binding protein -
  BN1079_RS14780 (BN1079_03033) - 3180068..3180997 (+) 930 WP_037025781.1 NAD-dependent epimerase/dehydratase family protein -
  BN1079_RS14785 (BN1079_03034) - 3181227..3181907 (-) 681 WP_037025783.1 OmpW/AlkL family protein -
  BN1079_RS14790 (BN1079_03035) - 3182116..3182886 (+) 771 WP_037025785.1 DUF3450 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18046.11 Da        Isoelectric Point: 5.9540

>NTDB_id=111357 BN1079_RS14770 WP_037025779.1 3178690..3179178(+) (ssb) [Pseudomonas saudiphocaensis strain 20_BN]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNVTLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMGGTMQLLGGRGGSSEDGPRQPRPQREPQQAARPQQSQPKPAAQQPAPDYDSFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=111357 BN1079_RS14770 WP_037025779.1 3178690..3179178(+) (ssb) [Pseudomonas saudiphocaensis strain 20_BN]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACGTCACGCTGGCAACCACCGATAGCTGGAAGGACAAACAAACCGGCCAGCTTCAGGAGCGCACCGAGT
GGCACCGCGTGGTGCTTTTCGGCAAGGTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTATATCGAA
GGGCGTCTGCAGACCCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTATACCACGGAGATCGTGGTCGACATGGGCGGCAC
CATGCAGCTGCTCGGTGGTCGTGGCGGTAGTTCCGAGGATGGCCCGCGTCAGCCGCGCCCGCAGCGTGAGCCGCAGCAGG
CAGCACGTCCTCAGCAGTCCCAGCCCAAGCCGGCCGCCCAGCAGCCGGCGCCCGACTACGACAGCTTCGACGACGATATT
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.749

100

0.605
  ssb Glaesserella parasuis strain SC1401

47.541

100

0.537
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.506
  ssb Neisseria meningitidis MC58

44.886

100

0.488

Multiple sequence alignment