Detailed information NTG0111342

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BN1079_RS08475
• Genome accession: NZ_CCSF01000001
• Coordinates: 1820014..1821354 (+)
• Length: 446 a.a.
• NCBI ID: WP_037023667.1
• Uniprot ID: A0A078LX57
• Organism: Pseudomonas saudiphocaensis strain 20_BN
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1815014..1826354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN1079_RS08455 (BN1079_01731)	rluD	1815657..1816631 (-)	975	WP_037023659.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
BN1079_RS08460 (BN1079_01732)	-	1816917..1817915 (+)	999	WP_037023661.1	outer membrane protein assembly factor BamD	-
BN1079_RS08465 (BN1079_01733)	-	1817995..1818231 (+)	237	WP_037023664.1	PP0621 family protein	-
BN1079_RS08470 (BN1079_01734)	pilS	1818221..1819813 (+)	1593	WP_052114456.1	sensor histidine kinase	Regulator
BN1079_RS08475 (BN1079_01735)	pilR	1820014..1821354 (+)	1341	WP_037023667.1	sigma-54-dependent transcriptional regulator	Regulator
BN1079_RS08480 (BN1079_01736)	-	1821431..1822480 (-)	1050	WP_037023670.1	DUF2333 family protein	-
BN1079_RS08485 (BN1079_01737)	-	1822692..1824302 (+)	1611	WP_037023672.1	response regulator	-
BN1079_RS17985	-	1825543..1826322 (+)	780	WP_408581883.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49877.24 Da
• Isoelectric Point: 6.2052

>NTDB_id=111342 BN1079_RS08475 WP_037023667.1 1820014..1821354(+) (pilR) [Pseudomonas saudiphocaensis strain 20_BN]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREQYDLCLTDMRLPDGCGLELVQHIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLSRLRELVNTALRLRSPSPNDLSADNRLLGNSPPMNLLRKQIAKLARSQAPV
YISGESGSGKELVARLIHEQGPRHDRPFIPVNCGAIPSELMESEFFGHKKGSFTGAIEDKPGLFQEANGGTLFLDEVADL
PLTMQVKLLRAIQEKAVRTVGGAKEVVVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDVALLAET
LLRRLADECGDRPARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLSDANGAGETPEASLAQIDNLE
DHLEEVERQLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=111342 BN1079_RS08475 WP_037023667.1 1820014..1821354(+) (pilR) [Pseudomonas saudiphocaensis strain 20_BN]
ATGACCGCCCGCCAAAAAGCCTTGATCATCGATGACGAACCCGACATCCGGGAACTCCTGGAGATCACCCTGGGGCGAAT
GAAGCTCGATACCCGCAGCGCACGCAATCTCAAGGAAGCCCGCGAGTGCCTGGCGCGCGAGCAATACGACCTGTGCCTCA
CTGATATGCGGCTGCCCGACGGTTGCGGACTGGAGCTGGTCCAGCACATCCAGCAACAGTATCCCCAGCTGCCGGTGGCG
ATGATCACCGCCTACGGCAGCCTTGATACCGCCATCGGCGCACTCAAGGCCGGCGCATTCGACTTTCTCACCAAACCCGT
GGATCTCAGCCGCCTGCGTGAGCTGGTCAACACCGCGCTGCGGCTGCGCAGTCCAAGCCCCAACGATCTGAGCGCCGACA
ACCGCCTGCTCGGCAACTCCCCGCCGATGAACCTGTTGCGCAAGCAGATCGCCAAGCTCGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGCGAATCAGGTAGCGGCAAGGAGCTGGTGGCACGCCTGATCCACGAGCAGGGGCCTCGCCACGACCGCCC
CTTCATCCCGGTCAACTGCGGAGCGATTCCATCGGAGCTGATGGAAAGCGAGTTCTTTGGTCACAAGAAAGGCAGTTTTA
CCGGTGCCATCGAAGACAAGCCCGGGCTGTTTCAGGAAGCCAACGGCGGCACCCTGTTCCTTGATGAGGTCGCCGATCTG
CCACTGACCATGCAGGTCAAGCTGCTGCGTGCCATTCAGGAAAAAGCCGTTCGCACGGTGGGCGGCGCCAAGGAAGTGGT
AGTGGATGTGCGTGTGCTCTGTGCCACCCACAAGGACCTCGCTGCCGAAGTTGCGGCAGGACGTTTCCGCCAGGATCTGT
ACTACCGCCTTAACGTCATCGAGCTGCGTGTTCCGCCTCTACGCGAGCGCCGTGAGGATGTTGCCCTGCTCGCCGAGACC
CTGCTGCGACGGCTCGCCGACGAATGCGGCGACCGCCCCGCGCGTCTGCACCCGGACGCCCTGGCGAAGCTGCAGAGCTA
CCGCTTTCCCGGCAACGTGCGCGAGCTGGAGAACATGCTGGAACGGGCCTACACGCTGTGCGAGGGCGATGAAATCAAGG
CCGGCGACCTGCGCCTGAGCGATGCCAACGGAGCCGGCGAGACCCCGGAAGCGAGCCTGGCGCAGATCGACAACCTGGAA
GATCATCTGGAAGAGGTCGAACGCCAGCTGATCATGCAGGCATTGGAAGAGACCCGCTGGAACCGCACTGCGGCTGCCCA
GCGCCTGGGGCTGACCTTCCGTTCCATGCGCTATCGATTGAAAAAGCTGGGGCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

3D structure

• AlphaFold DB: A0A078LX57

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	82.432	99.552	0.821
pilR	Acinetobacter baumannii strain A118	50.217	100	0.518
luxO	Vibrio cholerae strain A1552	39.367	99.103	0.39