Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   HMPREF9318_RS10755 Genome accession   NZ_KB373319
Coordinates   563980..565329 (+) Length   449 a.a.
NCBI ID   WP_006738842.1    Uniprot ID   -
Organism   Streptococcus urinalis FB127-CNA-2     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 558980..570329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS10730 (HMPREF9318_02147) - 559970..560620 (-) 651 WP_006738599.1 amino acid ABC transporter permease -
  HMPREF9318_RS10735 (HMPREF9318_02148) - 560633..561328 (-) 696 WP_006739051.1 amino acid ABC transporter permease -
  HMPREF9318_RS10740 (HMPREF9318_02149) - 561426..562175 (-) 750 WP_006740471.1 transporter substrate-binding domain-containing protein -
  HMPREF9318_RS10745 (HMPREF9318_02150) - 562185..562970 (-) 786 WP_006740230.1 amino acid ABC transporter ATP-binding protein -
  HMPREF9318_RS10750 (HMPREF9318_02151) vicR 563277..563987 (+) 711 WP_006740362.1 response regulator YycF Regulator
  HMPREF9318_RS10755 (HMPREF9318_02152) vicK 563980..565329 (+) 1350 WP_006738842.1 cell wall metabolism sensor histidine kinase VicK Regulator
  HMPREF9318_RS10760 (HMPREF9318_02153) vicX 565333..566142 (+) 810 WP_006739451.1 MBL fold metallo-hydrolase Regulator
  HMPREF9318_RS10765 (HMPREF9318_02154) rnc 566261..566947 (+) 687 WP_006738912.1 ribonuclease III -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51662.95 Da        Isoelectric Point: 5.1935

>NTDB_id=1113403 HMPREF9318_RS10755 WP_006738842.1 563980..565329(+) (vicK) [Streptococcus urinalis FB127-CNA-2]
MNDNIIGNLSLFELAILLLLVFVAFYFIYLAFRDYRNVKMIRTMSHKIRELIKGQYTEDITLKGDAELVELSEQLNDLSE
VFRLTHENLEQEKNRLASILAYMTDGVLATDRSGKITMINDTAQKQLNLSKEEALKLNLVDLLDSENNYTYRELVSKRPE
LAINKRNELGEFITLRIRFALNRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGAIK
EDVAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTRLEVEMTNFTAFITSILNRFDRIRNQHTINDKHYDIIRNYPLTS
IWVEIDNDKMTQVIDNIVNNAIKYSPDGGKITVSIKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIVKQHNGYIWAKSEYGKGSTFTIVLPYDKTSIDEEWEDDIE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1113403 HMPREF9318_RS10755 WP_006738842.1 563980..565329(+) (vicK) [Streptococcus urinalis FB127-CNA-2]
ATGAATGACAATATTATAGGGAATTTATCGCTCTTTGAATTAGCGATTCTATTACTTCTAGTTTTTGTTGCTTTTTACTT
TATTTATCTAGCTTTTCGTGATTATCGTAACGTTAAAATGATTCGTACCATGAGTCATAAAATCAGAGAACTGATAAAGG
GTCAGTATACAGAAGATATTACTCTGAAAGGTGATGCTGAATTAGTAGAGCTATCTGAGCAGCTCAATGATTTATCAGAA
GTTTTTCGCCTAACTCATGAAAATCTAGAACAAGAGAAAAATCGATTAGCTTCTATCTTAGCTTATATGACAGATGGTGT
GCTTGCGACGGATCGCTCGGGTAAAATTACTATGATTAATGATACTGCCCAAAAGCAGCTTAATCTTAGTAAAGAAGAGG
CTCTGAAGCTAAACTTGGTTGACTTACTTGATAGTGAAAATAATTATACCTATAGAGAACTTGTTTCTAAGCGGCCTGAG
TTAGCGATTAATAAACGAAATGAACTTGGGGAATTTATTACACTTCGAATTCGTTTTGCTTTAAATAGACGCGAAAGTGG
TTTTATTTCTGGTTTAGTTGCAGTATTGCATGATACAACTGAGCAAGAAAAGGAAGAAAGGGAGCGTCGTCTCTTTGTCT
CTAATGTCAGTCATGAATTAAGGACTCCTTTGACATCTGTTAAATCTTATTTAGAAGCCTTAGATGAAGGAGCCATTAAG
GAAGATGTTGCGCCAAGTTTTATCAAAGTTTCTTTGGACGAAACAAACAGGATGATGAGAATGATTTCTGATTTGTTAAA
CCTCTCTCGTATTGATAATCAAGTCACGCGCTTAGAAGTCGAGATGACTAACTTTACAGCATTTATTACTTCTATCTTAA
ACCGATTTGATCGTATTAGAAATCAGCACACGATAAATGATAAACATTATGATATTATCAGGAATTACCCTTTAACTTCG
ATTTGGGTAGAAATTGATAATGATAAAATGACTCAAGTTATTGATAATATTGTTAATAATGCAATTAAGTATTCTCCAGA
TGGTGGTAAAATTACCGTCTCTATAAAGACAACTGATACTCAATTAATTGTTTCTATTTCAGATCAAGGATTGGGTATTC
CAAAAAAAGATTTACCTTTAATCTTTGATCGTTTTTATCGTGTTGATAAAGCTAGAAGTCGTGCTCAAGGAGGTACTGGC
TTAGGTCTTGCAATTGCAAAAGAAATTGTTAAGCAACATAATGGCTATATTTGGGCAAAGAGTGAATATGGAAAAGGCTC
TACCTTTACAATTGTCTTACCATATGATAAAACAAGTATTGATGAGGAATGGGAGGATGACATAGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.544

91.759

0.675
  micB Streptococcus pneumoniae Cp1015

64.896

96.437

0.626

Multiple sequence alignment