Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HMPREF9318_RS10760 Genome accession   NZ_KB373319
Coordinates   565333..566142 (+) Length   269 a.a.
NCBI ID   WP_006739451.1    Uniprot ID   G5KIB0
Organism   Streptococcus urinalis FB127-CNA-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 560333..571142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS10735 (HMPREF9318_02148) - 560633..561328 (-) 696 WP_006739051.1 amino acid ABC transporter permease -
  HMPREF9318_RS10740 (HMPREF9318_02149) - 561426..562175 (-) 750 WP_006740471.1 transporter substrate-binding domain-containing protein -
  HMPREF9318_RS10745 (HMPREF9318_02150) - 562185..562970 (-) 786 WP_006740230.1 amino acid ABC transporter ATP-binding protein -
  HMPREF9318_RS10750 (HMPREF9318_02151) vicR 563277..563987 (+) 711 WP_006740362.1 response regulator YycF Regulator
  HMPREF9318_RS10755 (HMPREF9318_02152) vicK 563980..565329 (+) 1350 WP_006738842.1 cell wall metabolism sensor histidine kinase VicK Regulator
  HMPREF9318_RS10760 (HMPREF9318_02153) vicX 565333..566142 (+) 810 WP_006739451.1 MBL fold metallo-hydrolase Regulator
  HMPREF9318_RS10765 (HMPREF9318_02154) rnc 566261..566947 (+) 687 WP_006738912.1 ribonuclease III -
  HMPREF9318_RS10770 (HMPREF9318_02155) smc 566955..570512 (+) 3558 WP_006738577.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30191.20 Da        Isoelectric Point: 6.1169

>NTDB_id=1113404 HMPREF9318_RS10760 WP_006739451.1 565333..566142(+) (vicX) [Streptococcus urinalis FB127-CNA-2]
MSTNGFKYSILASGSTGNSFYLETPKKRLLIDAGLTGKKVTSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARKYHLD
IYANEKTWQVIDDCNMIGKIDSSQKHVFQRGKMITFGDIDIESFGVSHDAIDPQFYRFMKDNKSFVMLTDTGYVSDRMSG
IIQNADGYLIESNHDVEILRAGSYPWNLKQRILSDRGHLSNEDGADTMIRTLGNKTKKIYLGHLSKENNIKELAHMTMEN
QLMQADLGVGHDFQVCDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1113404 HMPREF9318_RS10760 WP_006739451.1 565333..566142(+) (vicX) [Streptococcus urinalis FB127-CNA-2]
ATGTCAACAAATGGATTTAAATACAGTATATTAGCATCAGGATCCACTGGAAATAGCTTTTATCTGGAGACGCCTAAAAA
GCGTCTTTTAATTGATGCTGGTTTAACTGGAAAAAAAGTAACCAGTTTATTAGCAGAAATTGATCGCAAACCTGAAGACC
TTGATGCTATTTTAATTACACACGAACATTCAGACCATATCAAAGGTGTAGGTGTTTTAGCTAGAAAATATCATCTTGAT
ATCTATGCCAATGAAAAGACTTGGCAAGTGATCGATGACTGTAATATGATTGGAAAGATTGATAGTAGTCAAAAGCATGT
CTTTCAAAGAGGAAAAATGATAACTTTTGGAGATATTGATATTGAAAGCTTTGGTGTTAGCCATGATGCCATAGATCCTC
AATTTTATCGCTTTATGAAAGATAATAAAAGTTTTGTGATGCTAACAGATACTGGATATGTCAGTGATCGTATGTCTGGT
ATTATTCAAAATGCAGATGGTTATCTCATTGAGTCAAATCATGATGTTGAAATTTTAAGGGCAGGTAGCTATCCATGGAA
TTTGAAACAACGCATATTATCAGATCGTGGACATCTTTCAAATGAAGATGGTGCAGATACAATGATTCGTACTTTGGGTA
ATAAAACCAAAAAAATTTACCTAGGGCATTTAAGTAAAGAAAATAATATTAAAGAATTAGCGCATATGACTATGGAAAAT
CAATTAATGCAAGCAGATTTAGGTGTGGGTCATGATTTTCAAGTTTGTGACACGTCGCCAGATACTGCTTGTCCACTAAC
AGATATTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KIB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.695

100

0.777

Multiple sequence alignment