Detailed information NTG0111330

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: BN1079_RS00485
• Genome accession: NZ_CCSF01000001
• Coordinates: 96985..99210 (+)
• Length: 741 a.a.
• NCBI ID: WP_171819273.1
• Uniprot ID: A0A078LNZ8
• Organism: Pseudomonas saudiphocaensis strain 20_BN
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 91985..104210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN1079_RS00455 (BN1079_00097)	-	92132..92437 (-)	306	WP_037021543.1	hypothetical protein	-
BN1079_RS00460 (BN1079_00098)	-	92439..93011 (-)	573	WP_037021545.1	PilZ domain-containing protein	-
BN1079_RS00465 (BN1079_00099)	-	93113..94360 (+)	1248	WP_037021547.1	lipoprotein-releasing ABC transporter permease subunit	-
BN1079_RS00470 (BN1079_00100)	lolD	94368..95066 (+)	699	WP_037026527.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
BN1079_RS00475 (BN1079_00101)	-	95066..96313 (+)	1248	WP_037021549.1	lipoprotein-releasing ABC transporter permease subunit	-
BN1079_RS00480 (BN1079_00102)	-	96316..96831 (-)	516	WP_037021551.1	DUF2062 domain-containing protein	-
BN1079_RS00485 (BN1079_00103)	comA	96985..99210 (+)	2226	WP_171819273.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
BN1079_RS00490 (BN1079_00104)	exbB	99282..99914 (+)	633	WP_037026529.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
BN1079_RS00495 (BN1079_00105)	-	99911..100336 (+)	426	WP_037021553.1	ExbD/TolR family protein	-
BN1079_RS00500 (BN1079_00106)	lpxK	100336..101340 (+)	1005	WP_037021554.1	tetraacyldisaccharide 4'-kinase	-
BN1079_RS00505 (BN1079_00107)	-	101384..101569 (+)	186	WP_037021556.1	Trm112 family protein	-
BN1079_RS00510 (BN1079_00108)	kdsB	101566..102330 (+)	765	WP_037021558.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
BN1079_RS00515 (BN1079_00109)	-	102333..102797 (+)	465	WP_037021560.1	low molecular weight protein-tyrosine-phosphatase	-
BN1079_RS00520 (BN1079_00110)	murB	102794..103813 (+)	1020	WP_037021561.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 81330.68 Da
• Isoelectric Point: 9.0808

>NTDB_id=111330 BN1079_RS00485 WP_171819273.1 96985..99210(+) (comA) [Pseudomonas saudiphocaensis strain 20_BN]
MRTAMLALAAGLLLLRFLPQLPPMWSLPVMLVVGLAMLPTRCRMLAFFFFGLAWACLSAQWALDDRLPKELDGRTFWLEG
RVVGLPDTRDGVVRFELVDISSRHAGLPSRVRLAWYGGPPLEAGERWRVAAKLKRPRGLVNPHSFDYEAWLLVGRIGANG
TVKAGERVAAAAGLQAWRDQLRQRLLAVDAQGRAGAIAALVVGDASGLTSADWRILQDTGTIHLMVISGQHVSMLAGLLY
GLVLLLARWGLWPARLPWLPCACALALLGALGYGWLAGFEVPVQRACLMVALVLLWRLRFRHLGVWLPLLAAFDTVLLIE
PLVSLQSGFWLSFAAVALLVLIFRGRLGIWNGWYALGRAQWCMALGLLPALLALGLPVSISGPLGNLFAVPLVGALIVPL
SLLGTALLWLPAIGEWLLWIAGSLLVALFALLEVLAAWQPAWFATDLPLWCWLLVTLGMLLLLLPAGIPFRAFGLILLTP
LLFPPVDKPPVGQAEIWVLDVGQGLAVLVRTREHALLYDAGPRYGDFDVGERVVYPSMRALGLRDLNLLLLSHADNDHAG
GAEAVQRYMLAPRVISGEPQRLPASLQAESCRSGEHWEWDGVRFTLWQWSGARNGNQASCVLLVEANGERLLLTGDIDKP
TEWALQASNLEISAHWLLLPHHGSRSSSSASFIEAVGARDALVSRSLHNAFGHPHPDVLRRLQDSGISLHDTAERGAIRI
RLGRFEPALGLRSERRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=111330 BN1079_RS00485 WP_171819273.1 96985..99210(+) (comA) [Pseudomonas saudiphocaensis strain 20_BN]
ATGCGTACGGCGATGCTGGCGCTGGCAGCAGGCTTATTGCTGCTGCGTTTTCTACCGCAACTGCCACCCATGTGGTCGCT
GCCGGTCATGCTTGTGGTCGGCCTGGCGATGTTGCCAACACGCTGCCGCATGCTGGCGTTCTTCTTTTTCGGTCTTGCCT
GGGCCTGCCTAAGCGCGCAGTGGGCGCTGGATGATCGGCTGCCGAAAGAACTGGACGGGCGAACCTTCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGACACCCGTGATGGCGTGGTGCGCTTCGAACTGGTTGATATTTCCTCTCGGCATGCCGGTCT
CCCTTCACGCGTGCGCCTCGCCTGGTACGGCGGGCCGCCGCTAGAGGCCGGAGAACGCTGGCGAGTGGCAGCCAAGCTGA
AGCGTCCACGAGGCTTGGTCAATCCTCATTCCTTCGATTATGAAGCCTGGCTGCTGGTCGGGCGGATCGGCGCCAACGGT
ACGGTCAAGGCCGGTGAGCGGGTAGCTGCTGCCGCAGGTCTGCAGGCCTGGCGCGACCAATTGCGGCAGCGTCTGCTGGC
GGTTGATGCGCAGGGCCGCGCGGGTGCCATCGCAGCGCTGGTGGTGGGCGATGCCAGTGGGCTGACTAGCGCAGACTGGC
GCATCCTGCAGGACACCGGGACCATCCACCTGATGGTGATTTCCGGTCAGCATGTGAGCATGCTAGCCGGCTTGCTCTAT
GGCCTGGTGCTGCTGTTGGCGCGCTGGGGGCTGTGGCCGGCACGCCTGCCATGGTTGCCCTGCGCCTGCGCGCTCGCGTT
GCTGGGTGCGCTTGGCTACGGTTGGCTGGCAGGTTTCGAGGTGCCGGTCCAGCGAGCCTGCCTGATGGTTGCACTGGTGC
TGCTCTGGCGCCTGCGTTTTCGTCATCTCGGCGTTTGGTTGCCCCTGTTGGCAGCTTTTGACACCGTGCTGTTGATAGAG
CCGCTGGTGAGCCTGCAGTCAGGTTTCTGGCTGTCGTTTGCGGCCGTGGCGCTGCTGGTCCTGATCTTTCGTGGCCGCCT
CGGCATCTGGAACGGGTGGTACGCCCTTGGGCGCGCGCAGTGGTGTATGGCCCTGGGGCTGTTGCCGGCGCTTCTGGCGC
TGGGCCTGCCGGTGAGTATCAGCGGGCCGCTGGGCAACCTTTTCGCAGTGCCGCTGGTGGGGGCGCTGATCGTGCCGCTG
TCGTTGCTGGGCACAGCGCTCTTGTGGCTGCCTGCAATTGGTGAGTGGTTACTGTGGATCGCCGGCAGCCTGCTTGTGGC
GCTATTCGCCCTACTGGAAGTGCTGGCCGCCTGGCAGCCTGCCTGGTTCGCTACAGACCTGCCGCTGTGGTGCTGGCTGT
TGGTGACCTTGGGCATGTTGCTGCTTCTGCTGCCTGCAGGCATACCCTTCCGGGCCTTTGGCTTGATACTGCTGACGCCC
TTGCTTTTTCCACCTGTCGATAAGCCGCCTGTCGGTCAGGCCGAGATATGGGTGCTGGACGTCGGCCAGGGGCTGGCGGT
CCTGGTGCGAACTCGCGAGCATGCACTGCTCTACGATGCTGGGCCGCGTTACGGTGATTTCGATGTCGGCGAGCGGGTGG
TATATCCCTCAATGCGGGCGCTCGGGCTGCGGGATCTGAACCTGTTGCTGCTTAGCCATGCCGACAACGATCATGCTGGC
GGCGCCGAGGCAGTCCAGCGATATATGCTGGCGCCACGGGTCATCAGCGGTGAGCCGCAGAGGTTGCCGGCATCGCTACA
GGCGGAAAGCTGCCGCTCAGGCGAGCACTGGGAGTGGGATGGCGTGCGTTTCACCCTTTGGCAATGGTCCGGAGCACGCA
ACGGTAACCAGGCGTCTTGTGTGCTGCTGGTTGAGGCTAATGGAGAACGTCTGCTGCTGACCGGTGATATTGACAAGCCT
ACCGAATGGGCATTGCAGGCCAGTAACCTGGAGATTTCGGCGCACTGGCTATTGCTGCCGCACCACGGTAGTCGCAGCTC
ATCTTCAGCCTCTTTTATCGAGGCAGTTGGCGCTAGGGATGCGCTGGTTTCCCGTAGCCTGCACAACGCATTCGGCCACC
CACATCCAGATGTACTACGGCGTTTGCAGGATTCGGGTATCTCACTTCATGACACCGCCGAGCGGGGCGCCATCAGAATT
CGCCTTGGCCGTTTCGAGCCGGCTCTGGGCTTGCGTAGCGAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (5-167)

• Competence protein (Competence) (200-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

3D structure

• AlphaFold DB: A0A078LNZ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	70.804	95.682	0.677
comA	Ralstonia pseudosolanacearum GMI1000	34.078	100	0.391