Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BN1079_RS00490 Genome accession   NZ_CCSF01000001
Coordinates   99282..99914 (+) Length   210 a.a.
NCBI ID   WP_037026529.1    Uniprot ID   -
Organism   Pseudomonas saudiphocaensis strain 20_BN     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 94282..104914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN1079_RS00470 (BN1079_00100) lolD 94368..95066 (+) 699 WP_037026527.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BN1079_RS00475 (BN1079_00101) - 95066..96313 (+) 1248 WP_037021549.1 lipoprotein-releasing ABC transporter permease subunit -
  BN1079_RS00480 (BN1079_00102) - 96316..96831 (-) 516 WP_037021551.1 DUF2062 domain-containing protein -
  BN1079_RS00485 (BN1079_00103) comA 96985..99210 (+) 2226 WP_171819273.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BN1079_RS00490 (BN1079_00104) exbB 99282..99914 (+) 633 WP_037026529.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BN1079_RS00495 (BN1079_00105) - 99911..100336 (+) 426 WP_037021553.1 ExbD/TolR family protein -
  BN1079_RS00500 (BN1079_00106) lpxK 100336..101340 (+) 1005 WP_037021554.1 tetraacyldisaccharide 4'-kinase -
  BN1079_RS00505 (BN1079_00107) - 101384..101569 (+) 186 WP_037021556.1 Trm112 family protein -
  BN1079_RS00510 (BN1079_00108) kdsB 101566..102330 (+) 765 WP_037021558.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BN1079_RS00515 (BN1079_00109) - 102333..102797 (+) 465 WP_037021560.1 low molecular weight protein-tyrosine-phosphatase -
  BN1079_RS00520 (BN1079_00110) murB 102794..103813 (+) 1020 WP_037021561.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22638.88 Da        Isoelectric Point: 8.5281

>NTDB_id=111331 BN1079_RS00490 WP_037026529.1 99282..99914(+) (exbB) [Pseudomonas saudiphocaensis strain 20_BN]
MWELVKAGGWIMLPIILCSIAAAGIVAERLWTLRPSRVTPPHLLGQVWKWIKDKKLSNQKLKELRAGSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSGMSNAALLASGISKALITTAA
GLIVAIPALFFHRFLTRRVEELVVGMEQEAIKLVEVVQGDRDVELGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=111331 BN1079_RS00490 WP_037026529.1 99282..99914(+) (exbB) [Pseudomonas saudiphocaensis strain 20_BN]
GTGTGGGAGCTTGTCAAAGCGGGTGGCTGGATCATGCTGCCCATCATTTTGTGTTCCATCGCAGCGGCAGGCATCGTCGC
CGAGCGCTTGTGGACCCTGCGGCCGAGTCGCGTGACACCTCCACACCTGCTTGGGCAGGTATGGAAGTGGATCAAGGACA
AGAAGCTGAGCAACCAGAAGCTCAAGGAGCTGCGTGCCGGCTCGCCGCTCGGTGAAATTCTGGCGGCGGGGCTGGCCAAC
TCGAAACATGGCCGCGAAATTATGAAGGAGTGCATCGAGGAAGCGGCAGCACGGGTGATTCATGATCTGGAACGCTACCT
GAACGCCCTCGGCACCATTGCAGGTATTGCGCCGCTGCTTGGCCTGCTTGGCACGGTGCTGGGCATGATCGAGATCTTCA
GTGCCTTCATGGGTTCGGGCATGTCCAATGCCGCCTTGCTTGCTTCCGGCATCTCCAAGGCGCTGATTACCACGGCGGCG
GGATTGATAGTGGCGATTCCGGCACTGTTCTTCCACCGGTTCCTGACTCGTCGGGTCGAGGAACTGGTTGTCGGCATGGA
GCAGGAGGCCATCAAGCTGGTCGAGGTGGTACAGGGCGACCGTGATGTCGAGCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

92.857

100

0.929

Multiple sequence alignment