Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V4T04_RS04450 Genome accession   NZ_JAZICS010000003
Coordinates   108840..109829 (-) Length   329 a.a.
NCBI ID   WP_349651741.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DGCC12653     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103840..114829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4T04_RS04435 - 105206..106132 (-) 927 WP_349651739.1 peptidyl-prolyl cis-trans isomerase -
  V4T04_RS04440 - 106286..106969 (-) 684 WP_033899351.1 O-methyltransferase -
  V4T04_RS04445 pepF 106972..108777 (-) 1806 WP_349651740.1 oligoendopeptidase F Regulator
  V4T04_RS04450 coiA 108840..109829 (-) 990 WP_349651741.1 competence protein CoiA Machinery gene
  V4T04_RS04455 - 109903..110988 (-) 1086 WP_017864887.1 YdcF family protein -
  V4T04_RS04460 - 111150..111998 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  V4T04_RS04465 - 112190..113611 (-) 1422 WP_349651742.1 NCS2 family permease -
  V4T04_RS04470 - 113918..114754 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39501.12 Da        Isoelectric Point: 8.7292

>NTDB_id=1113272 V4T04_RS04450 WP_349651741.1 108840..109829(-) (coiA) [Lactococcus lactis subsp. lactis strain DGCC12653]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYQVHGFKVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=1113272 V4T04_RS04450 WP_349651741.1 108840..109829(-) (coiA) [Lactococcus lactis subsp. lactis strain DGCC12653]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTAGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATAAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTAAGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.46

99.088

0.748
  coiA Streptococcus pneumoniae TIGR4

43.168

97.872

0.422
  coiA Streptococcus pneumoniae Rx1

43.168

97.872

0.422
  coiA Streptococcus pneumoniae D39

43.168

97.872

0.422
  coiA Streptococcus pneumoniae R6

43.168

97.872

0.422
  coiA Streptococcus mitis NCTC 12261

42.947

96.96

0.416

Multiple sequence alignment