Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IEC97_RS11775 Genome accession   NZ_JAEHGC010000004
Coordinates   144650..145072 (-) Length   140 a.a.
NCBI ID   WP_198310819.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139650..150072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS11750 (IEC97_11750) yiaA 140476..140946 (-) 471 WP_198310814.1 inner membrane protein YiaA -
  IEC97_RS11755 (IEC97_11755) - 141032..142153 (-) 1122 WP_232490087.1 acyltransferase -
  IEC97_RS11760 (IEC97_11760) - 142316..143416 (-) 1101 WP_198310816.1 3D domain-containing protein -
  IEC97_RS11765 (IEC97_11765) - 143668..144069 (-) 402 WP_198310817.1 hypothetical protein -
  IEC97_RS11770 (IEC97_11770) - 144457..144660 (-) 204 WP_198310818.1 hypothetical protein -
  IEC97_RS11775 (IEC97_11775) ssbB 144650..145072 (-) 423 WP_198310819.1 single-stranded DNA-binding protein Machinery gene
  IEC97_RS11780 (IEC97_11780) - 145367..145801 (+) 435 WP_198310820.1 YwpF family protein -
  IEC97_RS11785 (IEC97_11785) fabZ 145945..146379 (-) 435 WP_198310821.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IEC97_RS11790 (IEC97_11790) - 146475..146744 (-) 270 WP_198310822.1 DNA-directed RNA polymerase subunit beta -
  IEC97_RS11795 (IEC97_11795) - 147337..148338 (-) 1002 WP_026572749.1 rod shape-determining protein -
  IEC97_RS11800 (IEC97_11800) spoIIID 148595..148867 (-) 273 WP_026572748.1 sporulation transcriptional regulator SpoIIID -
  IEC97_RS11805 (IEC97_11805) - 149406..149714 (+) 309 WP_198310823.1 MGMT family protein -
  IEC97_RS11810 (IEC97_11810) - 149746..149946 (-) 201 WP_198310824.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15425.42 Da        Isoelectric Point: 8.5011

>NTDB_id=1112734 IEC97_RS11775 WP_198310819.1 144650..145072(-) (ssbB) [Neobacillus cucumis strain T4S4]
MINQVTLVGRLTKDPELKTTTDGTPVTQVTLAVSRNFRNHNGEIEADFVLCTLWRKAAENTAQYCRKGSVVGVTGRLHTR
NYEKEGKRVYITEVVGEQIRFLGAKPHAENPSPSPSPVPSQTQSPIPEPSEKKEEVPVGS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1112734 IEC97_RS11775 WP_198310819.1 144650..145072(-) (ssbB) [Neobacillus cucumis strain T4S4]
ATGATCAATCAAGTCACACTTGTCGGAAGACTGACGAAGGATCCAGAGCTGAAAACAACGACCGATGGAACTCCCGTTAC
GCAGGTGACGCTCGCTGTAAGCCGGAATTTTCGCAATCATAATGGAGAGATTGAAGCAGACTTTGTTTTGTGTACGCTGT
GGAGGAAAGCAGCTGAAAACACCGCGCAATACTGCCGGAAGGGTTCCGTCGTTGGGGTCACAGGGCGGCTGCACACCCGG
AATTACGAAAAAGAAGGAAAGAGGGTGTATATAACTGAGGTTGTCGGGGAACAAATCCGCTTTCTAGGCGCCAAACCGCA
TGCTGAGAATCCAAGCCCGAGTCCGTCTCCAGTTCCAAGCCAGACCCAGAGCCCGATTCCTGAACCGAGTGAAAAAAAGG
AGGAAGTACCAGTTGGAAGCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.551

76.429

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.282

73.571

0.421
  ssb Latilactobacillus sakei subsp. sakei 23K

52.727

78.571

0.414

Multiple sequence alignment