Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KHN93_RS15960 Genome accession   NZ_HG999362
Coordinates   3682448..3683842 (+) Length   464 a.a.
NCBI ID   WP_211920722.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3677448..3688842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN93_RS15945 (XCY_003188) sucD 3678341..3679216 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  KHN93_RS15950 (XCY_003189) sucC 3679241..3680410 (-) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  KHN93_RS15955 (XCY_003190) - 3680642..3682255 (+) 1614 WP_211920720.1 HAMP domain-containing sensor histidine kinase -
  KHN93_RS15960 (XCY_003191) pilR 3682448..3683842 (+) 1395 WP_211920722.1 sigma-54 dependent transcriptional regulator Regulator
  KHN93_RS15965 (XCY_003192) pilB 3684300..3686036 (-) 1737 WP_104600103.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN93_RS21725 (XCY_003194) - 3686666..3687118 (-) 453 WP_104600101.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KHN93_RS15980 (XCY_003195) pilC 3687472..3688725 (+) 1254 WP_104600100.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50199.58 Da        Isoelectric Point: 6.5718

>NTDB_id=1112637 KHN93_RS15960 WP_211920722.1 3682448..3683842(+) (pilR) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTHSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1112637 KHN93_RS15960 WP_211920722.1 3682448..3683842(+) (pilR) [Xanthomonas arboricola pv. juglandis isolate Xanthomonas arboricola pv. juglandis CPBF 1494 isolated from C. illinoinensis]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCTTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTAGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAGCTGAACAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTAGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCACTCCGCACTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAATATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGATCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACTCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCAT
TACGTTATAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment