Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHO07_RS03020 Genome accession   NZ_HG995459
Coordinates   655415..655930 (+) Length   171 a.a.
NCBI ID   WP_007970128.1    Uniprot ID   -
Organism   Pseudomonas sp. PP3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 650415..660930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO07_RS03005 bfr 650452..650916 (+) 465 WP_003228714.1 bacterioferritin -
  KHO07_RS03010 uvrA 650982..653816 (-) 2835 WP_150734588.1 excinuclease ABC subunit UvrA -
  KHO07_RS03015 - 654008..655405 (+) 1398 WP_150734589.1 MFS transporter -
  KHO07_RS03020 ssb 655415..655930 (+) 516 WP_007970128.1 single-stranded DNA-binding protein Machinery gene
  KHO07_RS03025 - 656359..657393 (+) 1035 WP_212626424.1 site-specific integrase -
  KHO07_RS03030 - 657356..658954 (+) 1599 WP_212626425.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18983.13 Da        Isoelectric Point: 5.9314

>NTDB_id=1112603 KHO07_RS03020 WP_007970128.1 655415..655930(+) (ssb) [Pseudomonas sp. PP3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGGNNYQQSAPRQQAPRPAPQQQPQRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1112603 KHO07_RS03020 WP_007970128.1 655415..655930(+) (ssb) [Pseudomonas sp. PP3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCGAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAATGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTCGCGGAAATCGCTGGCGAGTACCTGCGTAAGGGGTCGCAGGTTTACATCGAA
GGCAAACTTCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTGGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCTCAGGGCGACCAACAAGGCCAGGGCGGCGGTAACAACTACCAGCAATCCGCTCCGC
GCCAGCAGGCTCCACGCCCTGCACCGCAACAGCAGCCACAGCGTCCAGCCCCACAACAGGCTGCACCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.429

100

0.608
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.52
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.515
  ssb Neisseria meningitidis MC58

47.514

100

0.503

Multiple sequence alignment