Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | KHO06_RS15105 | Genome accession | NZ_HG992751 |
| Coordinates | 3259167..3259760 (-) | Length | 197 a.a. |
| NCBI ID | WP_212581827.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1FIG11 isolate LMG10946-nano | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3254167..3264760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHO06_RS15085 (ACOMICROBIO_LOCUS2019) | aroB | 3255040..3256140 (-) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
| KHO06_RS15090 (ACOMICROBIO_LOCUS2020) | aroK | 3256172..3256690 (-) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| KHO06_RS15095 (ACOMICROBIO_LOCUS2021) | pilQ | 3256879..3258627 (-) | 1749 | WP_045369316.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| KHO06_RS15100 (ACOMICROBIO_LOCUS2022) | pilP | 3258662..3259177 (-) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| KHO06_RS15105 (ACOMICROBIO_LOCUS2023) | pilO | 3259167..3259760 (-) | 594 | WP_212581827.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| KHO06_RS15110 (ACOMICROBIO_LOCUS2024) | pilN | 3259753..3260328 (-) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| KHO06_RS15115 (ACOMICROBIO_LOCUS2025) | pilM | 3260312..3261328 (-) | 1017 | WP_005432712.1 | type IV pilus assembly protein PilM | Machinery gene |
| KHO06_RS15120 (ACOMICROBIO_LOCUS2026) | - | 3261507..3264073 (+) | 2567 | Protein_2869 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23001.51 Da Isoelectric Point: 4.9377
>NTDB_id=1112496 KHO06_RS15105 WP_212581827.1 3259167..3259760(-) (pilO) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHNIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHNIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
Nucleotide
Download Length: 594 bp
>NTDB_id=1112496 KHO06_RS15105 WP_212581827.1 3259167..3259760(-) (pilO) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAGTGGCCGCTGGTGCCTCAGTTGGTGGCGATTCTTCTTAT
GGTGGTGTTGATCCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CACTCAATATTGAGCTAACGGGTGACTTCCATAACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAGTGGCCGCTGGTGCCTCAGTTGGTGGCGATTCTTCTTAT
GGTGGTGTTGATCCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CACTCAATATTGAGCTAACGGGTGACTTCCATAACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
98.947 |
96.447 |
0.954 |
| pilO | Vibrio cholerae strain A1552 |
71.728 |
96.954 |
0.695 |