Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KHO06_RS15110 Genome accession   NZ_HG992751
Coordinates   3259753..3260328 (-) Length   191 a.a.
NCBI ID   WP_005432710.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254753..3265328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS15085 (ACOMICROBIO_LOCUS2019) aroB 3255040..3256140 (-) 1101 WP_045380637.1 3-dehydroquinate synthase -
  KHO06_RS15090 (ACOMICROBIO_LOCUS2020) aroK 3256172..3256690 (-) 519 WP_010443904.1 shikimate kinase AroK -
  KHO06_RS15095 (ACOMICROBIO_LOCUS2021) pilQ 3256879..3258627 (-) 1749 WP_045369316.1 type IV pilus secretin PilQ family protein Machinery gene
  KHO06_RS15100 (ACOMICROBIO_LOCUS2022) pilP 3258662..3259177 (-) 516 WP_005432702.1 pilus assembly protein PilP Machinery gene
  KHO06_RS15105 (ACOMICROBIO_LOCUS2023) pilO 3259167..3259760 (-) 594 WP_212581827.1 type 4a pilus biogenesis protein PilO Machinery gene
  KHO06_RS15110 (ACOMICROBIO_LOCUS2024) pilN 3259753..3260328 (-) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  KHO06_RS15115 (ACOMICROBIO_LOCUS2025) pilM 3260312..3261328 (-) 1017 WP_005432712.1 type IV pilus assembly protein PilM Machinery gene
  KHO06_RS15120 (ACOMICROBIO_LOCUS2026) - 3261507..3264073 (+) 2567 Protein_2869 PBP1A family penicillin-binding protein -
  KHO06_RS15125 (ACOMICROBIO_LOCUS2028) oxyR 3264152..3265060 (-) 909 WP_005432705.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22194.53 Da        Isoelectric Point: 9.4267

>NTDB_id=1112497 KHO06_RS15110 WP_005432710.1 3259753..3260328(-) (pilN) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1112497 KHO06_RS15110 WP_005432710.1 3259753..3260328(-) (pilN) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTTGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTCGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAAACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

99.476

100

0.995
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56

Multiple sequence alignment