Detailed information NTG1112498

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: KHO06_RS15115
• Genome accession: NZ_HG992751
• Coordinates: 3260312..3261328 (-)
• Length: 338 a.a.
• NCBI ID: WP_005432712.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FIG11 isolate LMG10946-nano
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3255312..3266328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO06_RS15090 (ACOMICROBIO_LOCUS2020)	aroK	3256172..3256690 (-)	519	WP_010443904.1	shikimate kinase AroK	-
KHO06_RS15095 (ACOMICROBIO_LOCUS2021)	pilQ	3256879..3258627 (-)	1749	WP_045369316.1	type IV pilus secretin PilQ family protein	Machinery gene
KHO06_RS15100 (ACOMICROBIO_LOCUS2022)	pilP	3258662..3259177 (-)	516	WP_005432702.1	pilus assembly protein PilP	Machinery gene
KHO06_RS15105 (ACOMICROBIO_LOCUS2023)	pilO	3259167..3259760 (-)	594	WP_212581827.1	type 4a pilus biogenesis protein PilO	Machinery gene
KHO06_RS15110 (ACOMICROBIO_LOCUS2024)	pilN	3259753..3260328 (-)	576	WP_005432710.1	PilN domain-containing protein	Machinery gene
KHO06_RS15115 (ACOMICROBIO_LOCUS2025)	pilM	3260312..3261328 (-)	1017	WP_005432712.1	type IV pilus assembly protein PilM	Machinery gene
KHO06_RS15120 (ACOMICROBIO_LOCUS2026)	-	3261507..3264073 (+)	2567	Protein_2869	PBP1A family penicillin-binding protein	-
KHO06_RS15125 (ACOMICROBIO_LOCUS2028)	oxyR	3264152..3265060 (-)	909	WP_005432705.1	DNA-binding transcriptional regulator OxyR	-
KHO06_RS15130 (ACOMICROBIO_LOCUS2029)	-	3265235..3265963 (+)	729	WP_005432732.1	redoxin family protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37860.29 Da
• Isoelectric Point: 6.3141

>NTDB_id=1112498 KHO06_RS15115 WP_005432712.1 3260312..3261328(-) (pilM) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEMKKELPFRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFIKVDTDEQMRGTDSYQVFATRKDVVETRVEALQKSGLKPV
LVDVHSQSLGHMWKLVAERFPEKNKYCLLDIGSLNSSFTMFTEQGELFHKEFPCGTRTTGSLFQQDPLADDAQVATEQFN
RQIVERVKRQMQLYTSINGSQDIKGVWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDNAVSH

Nucleotide

• Length: 1017 bp

>NTDB_id=1112498 KHO06_RS15115 WP_005432712.1 3260312..3261328(-) (pilM) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCACTACTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAAAAAAGAGCTACCTTTTCGGGCTCGAAAGGTCGCAATTTCAGTTCCAGATAATGCT
GTGATCAGTAAAAAGCTGCAGATAGAGCAGAACTTAGAAGAGAGTGAAAAGGAGTTTGCTGTTGTGCAAGCCTTCTCACA
TCAATCTCCATTCCCTGTGGAAGAGCTGAGTCTTGACTTCATCAAGGTTGATACGGATGAGCAGATGCGAGGCACTGACA
GTTATCAGGTCTTCGCGACTCGTAAAGACGTGGTAGAAACCCGAGTTGAGGCATTGCAGAAATCAGGCTTGAAACCAGTA
CTGGTGGACGTGCACTCACAAAGTCTTGGTCATATGTGGAAATTGGTTGCGGAACGTTTTCCTGAAAAGAACAAGTATTG
TTTACTGGACATTGGTTCTTTGAACAGTTCTTTCACTATGTTCACCGAACAAGGTGAATTGTTTCATAAAGAATTTCCCT
GCGGTACTCGCACTACGGGCAGTTTGTTTCAACAAGATCCATTAGCAGACGACGCACAAGTGGCAACGGAGCAATTTAAT
CGACAAATCGTTGAGCGTGTTAAACGTCAGATGCAGCTCTATACCTCAATTAATGGAAGCCAAGATATCAAAGGCGTTTG
GCTTTCGGGAGAGGGCGCTGCAACACCTATGTTGGCCGAGGAGCTGTCTAGCCAGTTGGCACTAGAGTGTGAACTGCTTA
ATCCACTTGGTTTGTTTGAAATGAAGGTGTCTAAACGCAAACGTCGTGCCGCGGATTGGCAACACTTCACTGCTGCAGCC
GGACTGGCTGTACGTGGTATTCAGTGGCTAGGAGGTGACAATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio campbellii strain DS40M4	98.225	100	0.982
pilM	Vibrio cholerae strain A1552	49.415	100	0.5