Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KHN79_RS12515 Genome accession   NZ_HG992749
Coordinates   2742020..2742595 (-) Length   191 a.a.
NCBI ID   WP_182011509.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2737020..2747595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS12490 (ACOMICROBIO_LOCUS1816) aroB 2737325..2738425 (-) 1101 WP_182011504.1 3-dehydroquinate synthase -
  KHN79_RS12495 (ACOMICROBIO_LOCUS1817) aroK 2738457..2738975 (-) 519 WP_182011505.1 shikimate kinase AroK -
  KHN79_RS12500 (ACOMICROBIO_LOCUS1818) pilQ 2739164..2740897 (-) 1734 WP_182011506.1 type IV pilus secretin PilQ family protein Machinery gene
  KHN79_RS12505 (ACOMICROBIO_LOCUS1819) pilP 2740929..2741444 (-) 516 WP_182011507.1 pilus assembly protein PilP Machinery gene
  KHN79_RS12510 (ACOMICROBIO_LOCUS1820) pilO 2741434..2742027 (-) 594 WP_182011508.1 type 4a pilus biogenesis protein PilO Machinery gene
  KHN79_RS12515 (ACOMICROBIO_LOCUS1821) pilN 2742020..2742595 (-) 576 WP_182011509.1 PilN domain-containing protein Machinery gene
  KHN79_RS12520 (ACOMICROBIO_LOCUS1822) pilM 2742579..2743595 (-) 1017 WP_182011510.1 type IV pilus assembly protein PilM Machinery gene
  KHN79_RS12525 (ACOMICROBIO_LOCUS1823) - 2743738..2746305 (+) 2568 WP_182011511.1 PBP1A family penicillin-binding protein -
  KHN79_RS12530 (ACOMICROBIO_LOCUS1824) oxyR 2746374..2747282 (-) 909 WP_182011512.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22196.61 Da        Isoelectric Point: 7.5189

>NTDB_id=1112451 KHN79_RS12515 WP_182011509.1 2742020..2742595(-) (pilN) [Vibrio sp. B1FLJ16]
MLYRINLLPWRENQREEHRRRFVGLIVLGLFVAVGVQWSIGKFYEYQQDKQQERLGYLTHYIAELDQRIEAMKIAEQEHG
KILERLKVVEGLQLGRNKTTEFMNLMPAAIPEGVYVDKISMNDLEIEISGISDSTPRLATMLDNMERSAKLVDVEMHSIV
HGKSRFGKEFQTFKVSFRFKPVEKVEGGQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1112451 KHN79_RS12515 WP_182011509.1 2742020..2742595(-) (pilN) [Vibrio sp. B1FLJ16]
GTGCTGTATCGCATTAACCTATTGCCTTGGCGTGAAAACCAGAGGGAAGAGCATCGTCGCCGGTTTGTAGGACTGATTGT
TCTCGGTCTGTTTGTTGCGGTTGGTGTGCAATGGAGCATCGGAAAGTTCTATGAATATCAGCAGGATAAACAGCAAGAAA
GGCTCGGTTATCTTACTCATTATATTGCCGAGCTCGATCAACGTATTGAAGCGATGAAAATTGCTGAGCAGGAGCACGGC
AAAATACTGGAGCGCTTGAAAGTGGTTGAGGGATTACAACTGGGGCGTAACAAAACCACAGAGTTTATGAACCTCATGCC
TGCCGCTATTCCTGAAGGAGTGTATGTCGACAAGATCAGCATGAATGATCTGGAAATTGAAATATCCGGAATTTCTGATA
GTACGCCTCGACTGGCAACCATGCTCGATAACATGGAGCGTTCTGCAAAACTGGTGGATGTGGAAATGCATTCCATTGTT
CATGGTAAATCACGTTTTGGTAAAGAATTTCAGACCTTTAAGGTGTCCTTTAGGTTCAAACCAGTTGAGAAAGTAGAGGG
AGGTCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

80.628

100

0.806
  pilN Vibrio cholerae strain A1552

60.317

98.953

0.597

Multiple sequence alignment