Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   KHN79_RS05965 Genome accession   NZ_HG992749
Coordinates   1312395..1312982 (+) Length   195 a.a.
NCBI ID   WP_182008023.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307395..1317982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS05945 (ACOMICROBIO_LOCUS887) panP 1307489..1309135 (-) 1647 WP_182008027.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  KHN79_RS05950 (ACOMICROBIO_FLGHMIGD_01202) - 1309353..1309865 (-) 513 WP_182008026.1 hypothetical protein -
  KHN79_RS05955 (ACOMICROBIO_FLGHMIGD_01203) - 1310075..1310980 (-) 906 WP_182008025.1 lysine exporter LysO family protein -
  KHN79_RS05960 (ACOMICROBIO_LOCUS888) - 1311103..1312023 (-) 921 WP_182008024.1 HDOD domain-containing protein -
  KHN79_RS05965 (ACOMICROBIO_LOCUS889) tfoX 1312395..1312982 (+) 588 WP_182008023.1 TfoX/Sxy family DNA transformation protein Regulator
  KHN79_RS05970 (ACOMICROBIO_FLGHMIGD_01206) - 1313341..1313886 (-) 546 WP_182008022.1 hypothetical protein -
  KHN79_RS05975 (ACOMICROBIO_LOCUS890) - 1314089..1314586 (-) 498 WP_182008021.1 response regulator -
  KHN79_RS05980 (ACOMICROBIO_LOCUS891) - 1314583..1316523 (-) 1941 WP_182008020.1 ATP-binding protein -
  KHN79_RS05985 (ACOMICROBIO_FLGHMIGD_01209) - 1316728..1317975 (+) 1248 WP_211907273.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22485.74 Da        Isoelectric Point: 6.4737

>NTDB_id=1112429 KHN79_RS05965 WP_182008023.1 1312395..1312982(+) (tfoX) [Vibrio sp. B1FLJ16]
MDMTDQAFFKYVRNFSQYQKRSMFGGIGLFCDDAMFALVSNDSCYLRGGNGLDEELIQLNCEKYKHVKKQTTATVNYYDV
TDLFESGFSGLDELLQKSIDYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVEDVEAFLELGPVEVFNKVKQAYGN
DVDVKLLWKFAGAIDGIHWKLIQEPRKQQLLSLCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1112429 KHN79_RS05965 WP_182008023.1 1312395..1312982(+) (tfoX) [Vibrio sp. B1FLJ16]
ATGGACATGACAGACCAAGCTTTTTTTAAATACGTACGCAATTTTAGTCAATATCAGAAACGCTCCATGTTTGGCGGCAT
CGGTTTATTTTGTGATGACGCCATGTTTGCGCTAGTAAGTAACGATAGTTGTTATTTGCGCGGTGGTAATGGTTTAGATG
AAGAGTTAATACAACTCAATTGTGAAAAATATAAGCACGTCAAGAAACAGACGACAGCAACAGTTAACTATTATGATGTG
ACTGATCTGTTCGAATCCGGTTTTTCGGGTCTTGATGAGCTGTTACAAAAGTCAATAGACTACTCAATTAAGGAAAGAAA
ATACCAAAAATCTTCGGCGAGCAGACGGCTGAGAGACCTACCTAACATGCAACTTACGCTTGAGCGTATGGTGAAGAAAG
CCGGTGTTGAAGACGTGGAGGCGTTTTTGGAACTTGGCCCTGTTGAGGTTTTCAATAAAGTGAAGCAAGCATATGGCAAT
GACGTTGATGTTAAGTTGTTGTGGAAGTTTGCTGGTGCTATTGATGGTATTCACTGGAAACTCATCCAGGAACCGCGTAA
ACAACAGTTACTGTCACTGTGTGAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

89.744

100

0.897
  tfoX Vibrio campbellii strain DS40M4

88.205

100

0.882
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.394

98.974

0.677
  tfoX Vibrio cholerae strain A1552

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

58.115

97.949

0.569

Multiple sequence alignment