Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   KJB05_RS11000 Genome accession   NZ_HG992742
Coordinates   2399691..2400278 (-) Length   195 a.a.
NCBI ID   WP_208445411.1    Uniprot ID   -
Organism   Vibrio sp. B1ASS3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2394691..2405278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS10980 (ACOMICROBIO_NCLOACGD_02207) - 2394841..2396103 (-) 1263 WP_208445408.1 DUF945 family protein -
  KJB05_RS10985 (ACOMICROBIO_LOCUS1452) - 2396289..2398229 (+) 1941 WP_208445409.1 ATP-binding protein -
  KJB05_RS10990 (ACOMICROBIO_LOCUS1453) - 2398226..2398723 (+) 498 WP_208445410.1 response regulator -
  KJB05_RS10995 (ACOMICROBIO_NCLOACGD_02210) - 2398930..2399478 (+) 549 WP_005442235.1 hypothetical protein -
  KJB05_RS11000 (ACOMICROBIO_LOCUS1454) tfoX 2399691..2400278 (-) 588 WP_208445411.1 TfoX/Sxy family DNA transformation protein Regulator
  KJB05_RS11005 (ACOMICROBIO_LOCUS1455) - 2400649..2401569 (+) 921 WP_009705833.1 HDOD domain-containing protein -
  KJB05_RS11010 (ACOMICROBIO_NCLOACGD_02213) - 2401673..2402578 (+) 906 WP_208445412.1 lysine exporter LysO family protein -
  KJB05_RS11015 (ACOMICROBIO_NCLOACGD_02214) - 2402787..2403299 (+) 513 WP_005442243.1 hypothetical protein -
  KJB05_RS11020 (ACOMICROBIO_LOCUS1456) panP 2403421..2405067 (+) 1647 WP_208445413.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22399.55 Da        Isoelectric Point: 5.1225

>NTDB_id=1112397 KJB05_RS11000 WP_208445411.1 2399691..2400278(-) (tfoX) [Vibrio sp. B1ASS3]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDDEFTELNCEKYKHVKKQTTATVNYYDV
TDLFDSSFDGLDELLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1112397 KJB05_RS11000 WP_208445411.1 2399691..2400278(-) (tfoX) [Vibrio sp. B1ASS3]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGTGGTAT
TGGTTTATTCAGCAATGACGCAATGTTCGCGTTGGTAAGTAACGACTGTTGTTATTTACGCGGCGGAAATGGGTTGGATG
ATGAGTTTACTGAACTAAACTGCGAAAAGTATAAGCACGTCAAAAAACAAACGACGGCAACCGTAAACTATTACGACGTA
ACAGACCTGTTTGATTCAAGCTTTGATGGGTTAGACGAACTGTTACAAAAATCAATTGAATGTTCTATTAAGGAACGCAA
ATACCAAAAGTCTTCTGCCAGTAGACGTTTGCGTGATCTGCCAAATATGCAGTTAACGCTCGAACGCATGGTAAAGAAAG
CCGGCATTGATGATGTCGACACATTTTTAGAACTTGGACCGGTAGAAGTGTTCAACAAAGTCAGAGTTGCTTACGGCAGT
GACGTTGATGTGAAACTTCTATGGAAATTTGCTGGTGCGATCGATGGTATCCACTGGAAACTAATCCAAGAGCCACGCAA
GAAGCAATTGCTAGCCATGTGCGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

96.923

100

0.969
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579

Multiple sequence alignment