Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG1141_RS08765 Genome accession   NZ_HG938355
Coordinates   1717992..1718540 (+) Length   182 a.a.
NCBI ID   WP_007763736.1    Uniprot ID   A0A068SQ45
Organism   Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1712992..1723540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG1141_RS08755 (RG1141_CH17660) - 1713986..1714798 (-) 813 WP_038542991.1 DUF72 domain-containing protein -
  RG1141_RS08760 (RG1141_CH17670) uvrA 1714823..1717744 (-) 2922 WP_038549195.1 excinuclease ABC subunit UvrA -
  RG1141_RS08765 (RG1141_CH17680) ssb 1717992..1718540 (+) 549 WP_007763736.1 single-stranded DNA-binding protein Machinery gene
  RG1141_RS08770 (RG1141_CH17690) - 1718590..1719738 (-) 1149 WP_038549199.1 HPP family protein -
  RG1141_RS08775 (RG1141_CH17700) - 1719845..1720474 (-) 630 WP_038542993.1 MarC family protein -
  RG1141_RS08780 (RG1141_CH17710) gyrA 1720702..1723518 (+) 2817 WP_038542995.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19566.36 Da        Isoelectric Point: 5.3667

>NTDB_id=1112178 RG1141_RS08765 WP_007763736.1 1717992..1718540(+) (ssb) [Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNNGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGDRGGAGGNRVGNDFGGNDFGGGDDYERRPAAGGASRGG
QSSGGQPAGGNFSRDLDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1112178 RG1141_RS08765 WP_007763736.1 1717992..1718540(+) (ssb) [Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141]
ATGGCTGGTAGTGTGAACAAGGTAATCCTGGTGGGGAATGTGGGGGCTGATCCTGAAATCCGCCGGACGCAGGACGGCCG
GCCGATCGCCAACCTTCGCATCGCCACGTCCGAAACCTGGCGCGATCGCAACAACGGTGAACGCCGCGAGAAGACCGAAT
GGCATACGGTCGTCGTCTTCAACGAAGGCCTTTGCAAGGTCGTCGAGCAATATGTGAAAAAGGGCGCCAAGCTCTATATC
GAAGGCGCACTGCAGACCCGCAAGTGGCAGGACCAGACCGGCAACGACCGTTATTCGACGGAAATCGTGCTTCAGGGCTT
CAACTCGACGCTGACCATGCTGGACGGTCGCGGCGAGGGCGGCGGCGACCGTGGTGGTGCTGGCGGCAATCGTGTCGGCA
ATGACTTCGGCGGCAACGATTTTGGCGGCGGCGACGATTACGAGCGCCGGCCTGCTGCGGGCGGTGCGAGCCGCGGCGGT
CAGTCCTCCGGCGGTCAGCCGGCAGGCGGCAATTTCTCCCGTGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068SQ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.316

100

0.484
  ssb Vibrio cholerae strain A1552

47.191

97.802

0.462
  ssb Neisseria meningitidis MC58

36.559

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.559

100

0.374

Multiple sequence alignment