Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG540_RS08930 Genome accession   NZ_HG938353
Coordinates   1760889..1761437 (+) Length   182 a.a.
NCBI ID   WP_007763736.1    Uniprot ID   A0A068SQ45
Organism   Neorhizobium galegae bv. orientalis str. HAMBI 540     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1755889..1766437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG540_RS08920 (RG540_CH18060) - 1756881..1757693 (-) 813 WP_038586848.1 DUF72 domain-containing protein -
  RG540_RS08925 (RG540_CH18070) uvrA 1757718..1760639 (-) 2922 WP_038593374.1 excinuclease ABC subunit UvrA -
  RG540_RS08930 (RG540_CH18080) ssb 1760889..1761437 (+) 549 WP_007763736.1 single-stranded DNA-binding protein Machinery gene
  RG540_RS33115 (RG540_CH18090) - 1761706..1762116 (+) 411 WP_244446640.1 hypothetical protein -
  RG540_RS08940 (RG540_CH18100) - 1762369..1763517 (-) 1149 WP_038593378.1 HPP family protein -
  RG540_RS08945 (RG540_CH18110) - 1763627..1764256 (-) 630 WP_038586850.1 MarC family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19566.36 Da        Isoelectric Point: 5.3667

>NTDB_id=1112171 RG540_RS08930 WP_007763736.1 1760889..1761437(+) (ssb) [Neorhizobium galegae bv. orientalis str. HAMBI 540]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNNGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGDRGGAGGNRVGNDFGGNDFGGGDDYERRPAAGGASRGG
QSSGGQPAGGNFSRDLDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1112171 RG540_RS08930 WP_007763736.1 1760889..1761437(+) (ssb) [Neorhizobium galegae bv. orientalis str. HAMBI 540]
ATGGCTGGTAGTGTGAACAAGGTAATCCTGGTGGGGAATGTGGGGGCTGATCCTGAAATCCGCCGGACGCAGGACGGCCG
GCCGATCGCCAACCTTCGCATCGCCACGTCCGAAACCTGGCGCGATCGCAACAACGGCGAACGCCGCGAGAAGACCGAAT
GGCATACGGTCGTCGTCTTCAACGAAGGCCTTTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTTTATATC
GAAGGCGCACTGCAGACCCGCAAGTGGCAGGACCAGACAGGCAACGACCGTTATTCGACGGAAATCGTGCTTCAGGGATT
CAACTCGACGCTGACCATGCTGGACGGTCGCGGCGAGGGCGGCGGCGACCGTGGTGGTGCTGGCGGCAATCGTGTCGGCA
ATGACTTCGGCGGCAACGATTTTGGCGGCGGCGACGATTACGAGCGCCGGCCGGCGGCAGGCGGTGCGAGCCGCGGCGGT
CAGTCCTCCGGCGGTCAGCCGGCAGGCGGCAATTTCTCCCGCGATCTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068SQ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.316

100

0.484
  ssb Vibrio cholerae strain A1552

47.191

97.802

0.462
  ssb Neisseria meningitidis MC58

36.559

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.559

100

0.374

Multiple sequence alignment