Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   BN5_RS08075 Genome accession   NZ_HG916826
Coordinates   1746171..1746491 (+) Length   106 a.a.
NCBI ID   WP_003461577.1    Uniprot ID   W6REH9
Organism   Ectopseudomonas oleovorans CECT 5344 strain CECT5344     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741171..1751491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN5_RS08070 (BN5_1657) - 1743948..1745042 (-) 1095 WP_003461579.1 efflux RND transporter periplasmic adaptor subunit -
  BN5_RS22530 - 1745628..1745933 (+) 306 Protein_1640 transposase -
  BN5_RS08075 (BN5_1658) comE1/comEA 1746171..1746491 (+) 321 WP_003461577.1 helix-hairpin-helix domain-containing protein Machinery gene
  BN5_RS08080 (BN5_1659) recC 1746650..1750063 (+) 3414 WP_003461576.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11074.38 Da        Isoelectric Point: 4.3085

>NTDB_id=1112115 BN5_RS08075 WP_003461577.1 1746171..1746491(+) (comE1/comEA) [Ectopseudomonas oleovorans CECT 5344 strain CECT5344]
MKNYLSSVLFALLASFSFAVSAVDTGNAEAGEATSEQVAQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGSFA
SVDELLEVKGIGEATLNKNRDKLVVD

Nucleotide


Download         Length: 321 bp        

>NTDB_id=1112115 BN5_RS08075 WP_003461577.1 1746171..1746491(+) (comE1/comEA) [Ectopseudomonas oleovorans CECT 5344 strain CECT5344]
ATGAAAAACTACCTCTCTTCTGTTCTCTTTGCGCTTCTTGCCTCTTTCTCCTTCGCTGTATCCGCAGTCGACACTGGAAA
TGCCGAGGCTGGCGAAGCGACCTCTGAGCAAGTCGCTCAGGCTGTAACCGTCAATCTCAATACTGCTGATGCAGAGACGC
TCCAGCGTGAGCTGGCGGGTATCGGTGCAACCAAAGCTCAGGCAATCGTGGCCTATCGTGAGGCTCATGGCAGTTTTGCG
TCTGTTGACGAACTGCTTGAGGTCAAGGGTATTGGTGAGGCGACTCTGAATAAGAATCGCGACAAACTGGTAGTCGACTG
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6REH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

47.863

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

46.847

100

0.491
  comEA Legionella pneumophila str. Paris

41.414

93.396

0.387
  comEA Legionella pneumophila strain ERS1305867

41.414

93.396

0.387
  comEA Streptococcus thermophilus LMD-9

45.977

82.075

0.377

Multiple sequence alignment